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agfg1b ArfGAP with FG repeats 1b [ Danio rerio (zebrafish) ]

Gene ID: 393560, updated on 27-Mar-2024

Summary

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Official Symbol
agfg1bprovided by ZNC
Official Full Name
ArfGAP with FG repeats 1bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-1520
See related
Ensembl:ENSDARG00000019526 AllianceGenome:ZFIN:ZDB-GENE-040426-1520
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:66055
Summary
Predicted to enable GTPase activator activity and metal ion binding activity. Orthologous to human AGFG1 (ArfGAP with FG repeats 1). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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Location:
chromosome: 2
Exon count:
12
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 2 NC_007113.7 (16460305..16479291)
105 previous assembly GRCz10 (GCF_000002035.5) 2 NC_007113.6 (16791722..16810701)

Chromosome 2 - NC_007113.7Genomic Context describing neighboring genes Neighboring gene ATR serine/threonine kinase Neighboring gene zgc:110269 Neighboring gene olfactory receptor 2T2-like Neighboring gene uncharacterized LOC100002071 Neighboring gene F-box protein 36b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Depletion of Tissue-Specific Ion Transporters Causes Differential Expression of PRL Targets in Response to Increased Levels of Endogenous PRL. Shu T, et al. Front Endocrinol (Lausanne), 2018. PMID 30515132, Free PMC Article
  2. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
  3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Clone Names

  • MGC66055

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables GTPase activator activity IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in acrosome assembly IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in intermediate filament organization IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in spermatid nucleus differentiation IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in cytoplasmic vesicle IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
arf-GAP domain and FG repeat-containing protein 1b; arfGAP with FG repeats 1b
Names
DKEYP-13A3.4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_200588.2 → NP_956882.2  arf-GAP domain and FG repeat-containing protein 1b

    Status: PROVISIONAL

    Source sequence(s)
    CR377211
    UniProtKB/TrEMBL
    A0A8M1PFE8, B0UXL9
    Related
    ENSDARP00000119105.1, ENSDART00000145107.3
    Conserved Domains (1) summary
    smart00105
    Location:17 → 135
    ArfGap; Putative GTP-ase activating proteins for the small GTPase, ARF

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007113.7 Reference GRCz11 Primary Assembly

    Range
    16460305..16479291
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005163316.4 → XP_005163373.1  arfGAP with FG repeats 1b isoform X1

    UniProtKB/TrEMBL
    A0A8M2BAC3
    Conserved Domains (1) summary
    smart00105
    Location:17 → 135
    ArfGap; Putative GTP-ase activating proteins for the small GTPase, ARF
Nucleotide Protein
Heading Accession and Version

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