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Cpsf5 Cleavage and polyadenylation specific factor 5 [ Drosophila melanogaster (fruit fly) ]

Gene ID: 39083, updated on 10-May-2024

Summary

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Official Symbol
Cpsf5provided by FlyBase
Official Full Name
Cleavage and polyadenylation specific factor 5provided by FlyBase
Primary source
FLYBASE:FBgn0288470
Locus tag
Dmel_CG3689
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
cdi12; Cdi12; CDI12; CF I[[m]]25; CFI25; CFIm25; CG3689; CPSF5; Dmel\CG3689
Orthologs
all
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Genomic context

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Location:
67B5-67B5; 3-29 cM
Exon count:
5
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3L NT_037436.4 (9411038..9413835)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3L NT_037436.3 (9404138..9406737)

Chromosome 3L - NT_037436.4Genomic Context describing neighboring genes Neighboring gene Cuticular protein 67B Neighboring gene uncharacterized protein Neighboring gene alpha-tubulin acetylase Neighboring gene uncharacterized protein Neighboring gene astray

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Isolation of Drosophila cyclin D, a protein expressed in the morphogenetic furrow before entry into S phase. Finley RL Jr, et al. Proc Natl Acad Sci U S A, 1996 Apr 2. PMID 8610160, Free PMC Article
  2. Interaction mating reveals binary and ternary connections between Drosophila cell cycle regulators. Finley RL Jr, et al. Proc Natl Acad Sci U S A, 1994 Dec 20. PMID 7809159, Free PMC Article
  3. A strategy for constructing large protein interaction maps using the yeast two-hybrid system: regulated expression arrays and two-phase mating. Zhong J, et al. Genome Res, 2003 Dec. PMID 14613974, Free PMC Article
  4. Use of circular RNAs as markers of readthrough transcription to identify factors regulating cleavage/polyadenylation events. Liang D, et al. Methods, 2021 Dec. PMID 33882363, Free PMC Article
  5. Molecular Regulation of Alternative Polyadenylation (APA) within the Drosophila Nervous System. Vallejos Baier R, et al. J Mol Biol, 2017 Oct 27. PMID 28366829, Free PMC Article

See all (53) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of mRNA cleavage factor complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
cleavage and polyadenylation specific factor 5
Names
CG3689-PB
CG3689-PC
Cpsf5-PB
Cpsf5-PC
Cyclin-dependent kinase interactor 12

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_037436.4 Reference assembly

    Range
    9411038..9413835
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001043132.3 → NP_001036597.1  cleavage and polyadenylation specific factor 5, isoform C [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001036597.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q0E8G6
    Conserved Domains (1) summary
    pfam13869
    Location:45 → 232
    NUDIX_2; Nucleotide hydrolase

  2. NM_140051.3 → NP_648308.1  cleavage and polyadenylation specific factor 5, isoform B [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_648308.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8T9F4, Q9VSY2
    Related
    FBpp0076184
    Conserved Domains (1) summary
    pfam13869
    Location:45 → 192
    NUDIX_2; Nucleotide hydrolase
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q0E8G6 Q0E8G6
Q9VSY2 Q9VSY2

Gene LinkOut

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