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taf12 TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor [ Danio rerio (zebrafish) ]

Gene ID: 386637, updated on 27-Mar-2024

Summary

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Official Symbol
taf12provided by ZNC
Official Full Name
TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factorprovided by ZNC
Primary source
ZFIN:ZDB-GENE-031030-5
See related
Ensembl:ENSDARG00000104030 AllianceGenome:ZFIN:ZDB-GENE-031030-5
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fl03a12; wu:fl03a12
Summary
Predicted to enable DNA binding activity and TBP-class protein binding activity. Predicted to be involved in RNA polymerase II preinitiation complex assembly. Predicted to act upstream of or within DNA-templated transcription, initiation. Predicted to be located in nucleus. Predicted to be part of transcription factor TFIID complex. Orthologous to human TAF12 (TATA-box binding protein associated factor 12). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 16
Exon count:
6
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 16 NC_007127.7 (35408856..35415067, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 16 NC_007127.6 (35455981..35462189, complement)

Chromosome 16 - NC_007127.7Genomic Context describing neighboring genes Neighboring gene RAB39a, member RAS oncogene family-like Neighboring gene RAB42, member RAS oncogene family Neighboring gene CTP synthase 1b Neighboring gene Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables TBP-class protein binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within DNA-templated transcription initiation IEA
Inferred from Electronic Annotation
more info
  
involved_in RNA polymerase II preinitiation complex assembly IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
part_of SAGA complex IEA
Inferred from Electronic Annotation
more info
  
part_of SLIK (SAGA-like) complex IEA
Inferred from Electronic Annotation
more info
  
part_of transcription factor TFIID complex IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of transcription factor TFIID complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
transcription initiation factor TFIID subunit 12

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_198368.1 → NP_938182.1  transcription initiation factor TFIID subunit 12

    See identical proteins and their annotated locations for NP_938182.1

    Status: PROVISIONAL

    Source sequence(s)
    BC056696
    UniProtKB/TrEMBL
    A7MCI8, Q6P013
    Related
    ENSDARP00000130095.1, ENSDART00000170048.2
    Conserved Domains (1) summary
    cd07981
    Location:58 → 129
    TAF12; TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007127.7 Reference GRCz11 Primary Assembly

    Range
    35408856..35415067 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009292430.3 → XP_009290705.1  transcription initiation factor TFIID subunit 12 isoform X1

    See identical proteins and their annotated locations for XP_009290705.1

    UniProtKB/TrEMBL
    A7MCI8, Q6P013
    Related
    ENSDARP00000135237.1, ENSDART00000157832.2
    Conserved Domains (1) summary
    cd07981
    Location:58 → 129
    TAF12; TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394966.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    75497..81655 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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