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Rbp7 retinol binding protein 7 [ Rattus norvegicus (Norway rat) ]

Gene ID: 362662, updated on 3-Apr-2024

Summary

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Official Symbol
Rbp7provided by RGD
Official Full Name
retinol binding protein 7provided by RGD
Primary source
RGD:1562168
See related
AllianceGenome:RGD:1562168
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1562168
Summary
Predicted to enable fatty acid binding activity and retinoid binding activity. Predicted to be involved in fatty acid transport. Predicted to be active in cytosol and nucleus. Orthologous to human RBP7 (retinol binding protein 7). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Heart (RPKM 216.5), Adrenal (RPKM 166.3) and 6 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
5q36
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (165169700..165177427, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (159889723..159894338, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (166278214..166282832, complement)

Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102547502 Neighboring gene ubiquitination factor E4B Neighboring gene nicotinamide nucleotide adenylyltransferase 1 Neighboring gene uncharacterized LOC134479087 Neighboring gene leucine zipper and CTNNBIP1 domain containing

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Characterization of a new member of the fatty acid-binding protein family that binds all-trans-retinol. Vogel S, et al. J Biol Chem, 2001 Jan 12. PMID 11022035
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables fatty acid binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables retinoid binding ISO
Inferred from Sequence Orthology
more info
  
Process Evidence Code Pubs
involved_in fatty acid transport IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
retinoid-binding protein 7
Names
retinol binding protein 7, cellular
NP_001102163.1
XP_063144154.1
XP_063144155.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001108693.1 → NP_001102163.1  retinoid-binding protein 7

    See identical proteins and their annotated locations for NP_001102163.1

    Status: PROVISIONAL

    Source sequence(s)
    CH473968
    UniProtKB/TrEMBL
    A6IUB1
    Conserved Domains (1) summary
    cd19465
    Location:4 → 134
    CRBP4; cellular retinol-binding protein 4

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086023.1 Reference GRCr8

    Range
    165169700..165177427 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063288084.1 → XP_063144154.1  retinoid-binding protein 7 isoform X1

    UniProtKB/TrEMBL
    A6IUB1

  2. XM_063288085.1 → XP_063144155.1  retinoid-binding protein 7 isoform X1

    UniProtKB/TrEMBL
    A6IUB1
Nucleotide Protein Strain
Heading Accession and Version

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