rpl7a ribosomal protein L7a [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: rpl7aprovided by ZNC
Official Full Name: ribosomal protein L7aprovided by ZNC
Primary source: ZFIN:ZDB-GENE-031001-9
See related: Ensembl:ENSDARG00000019230 AllianceGenome:ZFIN:ZDB-GENE-031001-9
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: zgc:73183; zgc:86667; wu:fa95b03
Summary: Predicted to enable RNA binding activity. Predicted to be involved in maturation of LSU-rRNA. Predicted to act upstream of or within ribosome biogenesis. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in brain; eye; immature eye; neural plate; and presumptive neural plate. Orthologous to human RPL7A (ribosomal protein L7a). [provided by Alliance of Genome Resources, Apr 2022]
Annotation information: Annotation category: partial on reference assembly
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 5

Exon count:: 7

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	5	NC_007116.7 (33284144..33286817, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	5	NC_007116.6 (32683991..32686664, complement)

Chromosome 5 - NC_007116.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables RNA binding	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
involved_in maturation of LSU-rRNA	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within ribosome biogenesis	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
part_of cytosolic large ribosomal subunit	IBA Inferred from Biological aspect of Ancestor more info
part_of ribonucleoprotein complex	IEA Inferred from Electronic Annotation more info
located_in ribosome	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: 60S ribosomal protein L7a

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_200047.1 → NP_956341.1 60S ribosomal protein L7a

See identical proteins and their annotated locations for NP_956341.1

Status: PROVISIONAL

Source sequence(s)

BC059533

UniProtKB/TrEMBL

A5WUL5, Q6PBZ1

Related

ENSDARP00000151111.1, ENSDART00000184426.1

Conserved Domains (2) summary

PTZ00365
Location:12 → 266

PTZ00365; 60S ribosomal protein L7Ae-like; Provisional

cl00600
Location:13 → 252

Ribosomal_L7Ae; Ribosomal protein L7Ae/L30e/S12e/Gadd45 family