rplp1 ribosomal protein lateral stalk subunit P1 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: rplp1provided by ZNC
Official Full Name: ribosomal protein lateral stalk subunit P1provided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-8663
See related: Ensembl:ENSDARG00000021864 AllianceGenome:ZFIN:ZDB-GENE-030131-8663
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fa93f02; zgc:77776; wu:fa93f02
Summary: Predicted to enable protein kinase activator activity and ribonucleoprotein complex binding activity. Predicted to be a structural constituent of ribosome. Acts upstream of or within erythrocyte differentiation. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in unfertilized egg. Orthologous to human RPLP1 (ribosomal protein lateral stalk subunit P1). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 19

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	19	NC_007130.7 (1852270..1855351, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	19	NC_007130.6 (1902415..1905496, complement)

Chromosome 19 - NC_007130.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

fa93f02.x1 (e-PCR)
- UniSTS:189682

fa93f02.x1 (e-PCR)
- UniSTS:189683

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables protein kinase activator activity	IBA Inferred from Biological aspect of Ancestor more info
enables ribonucleoprotein complex binding	IBA Inferred from Biological aspect of Ancestor more info
enables structural constituent of ribosome	IBA Inferred from Biological aspect of Ancestor more info
enables structural constituent of ribosome	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in cytoplasmic translation	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within erythrocyte differentiation	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within translational elongation	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
part_of cytosolic large ribosomal subunit	IBA Inferred from Biological aspect of Ancestor more info
part_of ribonucleoprotein complex	IEA Inferred from Electronic Annotation more info
located_in ribosome	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: 60S acidic ribosomal protein P1

Names: ribosomal protein, large, P1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_200029.1 → NP_956323.1 60S acidic ribosomal protein P1

See identical proteins and their annotated locations for NP_956323.1

Status: PROVISIONAL

Source sequence(s)

BC062852

UniProtKB/TrEMBL

A0A8M1PDW5, Q6P5K5

Related

ENSDARP00000033600.5, ENSDART00000029646.7

Conserved Domains (1) summary

cd05831
Location:6 → 63

Ribosomal_P1; Ribosomal protein P1. This subfamily represents the eukaryotic large ribosomal protein P1. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P1 is located in the L12 stalk, with proteins ...