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rpl17 ribosomal protein L17 [ Danio rerio (zebrafish) ]

Gene ID: 336641, updated on 27-Mar-2024

Summary

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Official Symbol
rpl17provided by ZNC
Official Full Name
ribosomal protein L17provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-8585
See related
Ensembl:ENSDARG00000057556 AllianceGenome:ZFIN:ZDB-GENE-030131-8585
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fa91a06; zgc:65996; wu:fa91a06; wu:fa99c06
Summary
Predicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translation. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Orthologous to several human genes including RPL17-C18orf32 (RPL17-C18orf32 readthrough). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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See rpl17 in Genome Data Viewer
Location:
chromosome: 21
Exon count:
8
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 21 NC_007132.7 (19061745..19067521)
105 previous assembly GRCz10 (GCF_000002035.5) 21 NC_007132.6 (19025109..19030885)

Chromosome 21 - NC_007132.7Genomic Context describing neighboring genes Neighboring gene neurofilament light chain a Neighboring gene neurofilament medium chain a Neighboring gene NK6 homeobox 1 Neighboring gene glycerol-3-phosphate acyltransferase 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Genome Editing in Zebrafish by ScCas9 Recognizing NNG PAM. Liu Y, et al. Cells, 2021 Aug 16. PMID 34440868, Free PMC Article
  2. SpG and SpRY variants expand the CRISPR toolbox for genome editing in zebrafish. Liang F, et al. Nat Commun, 2022 Jun 14. PMID 35701400, Free PMC Article
  3. Effects of Lithium and 2,4-Dichlorophenol on Zebrafish: Circadian Rhythm Disorder and Molecular Effects. Xiao B, et al. Zebrafish, 2017 Jun. PMID 28318412
  4. NEFLb impairs early nervous system development via regulation of neuron apoptosis in zebrafish. Wang S, et al. J Cell Physiol, 2019 Jul. PMID 30569449
  5. Repetitive Elements Trigger RIG-I-like Receptor Signaling that Regulates the Emergence of Hematopoietic Stem and Progenitor Cells. Lefkopoulos S, et al. Immunity, 2020 Nov 17. PMID 33159854

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables structural constituent of ribosome IBA
Inferred from Biological aspect of Ancestor
more info
  
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in cytoplasmic translation IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within translation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of cytosolic large ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of large ribosomal subunit IEA
Inferred from Electronic Annotation
more info
  
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
  
located_in ribosome IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
60S ribosomal protein L17

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001243037.2 → NP_001229966.1  60S ribosomal protein L17

    See identical proteins and their annotated locations for NP_001229966.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Both variants 1 and 2 encode the same protein.
    Source sequence(s)
    BX000991, EH488885
    UniProtKB/TrEMBL
    A0A8M1NYQ3, Q7T1K0
    Related
    ENSDARP00000113553.1, ENSDART00000131366.3
    Conserved Domains (1) summary
    PTZ00178
    Location:1 → 163
    PTZ00178; 60S ribosomal protein L17; Provisional

  2. NM_001319650.1 → NP_001306579.1  60S ribosomal protein L17

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript. Both variants 1 and 2 encode the same protein.
    Source sequence(s)
    BX000991, EH543457
    UniProtKB/TrEMBL
    A0A8M1NYQ3, Q7T1K0
    Related
    ENSDARP00000119756.1, ENSDART00000132882.3
    Conserved Domains (1) summary
    PTZ00178
    Location:1 → 163
    PTZ00178; 60S ribosomal protein L17; Provisional

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007132.7 Reference GRCz11 Primary Assembly

    Range
    19061745..19067521
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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