rplp2 ribosomal protein, large P2 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: rplp2provided by ZNC
Official Full Name: ribosomal protein, large P2provided by ZNC
Primary source: ZFIN:ZDB-GENE-031018-2
See related: Ensembl:ENSDARG00000101406 AllianceGenome:ZFIN:ZDB-GENE-031018-2
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: RpP1; zgc:73372; wu:fb05g05; wu:fj30h02
Summary: Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within cytoplasmic translational elongation. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in female organism. Orthologous to human RPLP2 (ribosomal protein lateral stalk subunit P2). [provided by Alliance of Genome Resources, Apr 2022]
Annotation information: Annotation category: partial on reference assembly
Orthologs: all
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Genomic context

Location:: chromosome: 6

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	6	NC_007117.7 (49508800..49511620, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	6	NC_007117.6 (49510147..49512923, complement)

Chromosome 6 - NC_007117.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

fj30h02.x1 (e-PCR)
- UniSTS:199028

fb13d07.x1 (e-PCR)
- UniSTS:190098

fb13d07.x1 (e-PCR)
- UniSTS:190099

AI331174 (e-PCR)
- UniSTS:206799

fb05g05.x1 (e-PCR)
- UniSTS:202706

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables structural constituent of ribosome	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within cytoplasmic translational elongation	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within translational elongation	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
part_of cytosolic large ribosomal subunit	IEA Inferred from Electronic Annotation more info
part_of ribonucleoprotein complex	IEA Inferred from Electronic Annotation more info
located_in ribosome	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: 60S acidic ribosomal protein P2

Names: Ribosomal protein P1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_212743.1 → NP_997908.1 60S acidic ribosomal protein P2

See identical proteins and their annotated locations for NP_997908.1

Status: PROVISIONAL

Source sequence(s)

BC059681

UniProtKB/TrEMBL

A0A8M1PFK6, Q6PBJ9

Related

ENSDARP00000134976.1, ENSDART00000166238.3

Conserved Domains (1) summary

cd05833
Location:1 → 115

Ribosomal_P2; Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins ...

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007117.7 Reference GRCz11 Primary Assembly

Range

49508800..49511620 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_021476788.1 → XP_021332463.1 60S acidic ribosomal protein P2 isoform X1

UniProtKB/TrEMBL

A0A8M9PZH4

Conserved Domains (1) summary

cd05833
Location:34 → 148

Ribosomal_P2; Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins ...