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rnps1 RNA binding protein S1, serine-rich domain [ Danio rerio (zebrafish) ]

Gene ID: 327020, updated on 27-Mar-2024

Summary

Official Symbol
rnps1provided by ZNC
Official Full Name
RNA binding protein S1, serine-rich domainprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-5228
See related
Ensembl:ENSDARG00000100188 Ensembl:ENSDARG00000116743 AllianceGenome:ZFIN:ZDB-GENE-030131-5228
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:65775; wu:fa19a11
Summary
Predicted to enable RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nuclear speck. Predicted to be part of ASAP complex. Predicted to be active in cytoplasm and nucleoplasm. Orthologous to human RNPS1 (RNA binding protein with serine rich domain 1). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
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Genomic context

Location:
chromosome: 3
Exon count:
7
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (9432448..9444068, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (9492968..9504897, complement)

Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog Neighboring gene G protein-coupled receptor 139 Neighboring gene si:dkey-29p9.3 Neighboring gene NAD(P)(+)--arginine ADP-ribosyltransferase 2-like

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Pathways from PubChem

General gene information

Markers

Clone Names

  • MGC77278

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within RNA splicing IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within mRNA processing IEA
Inferred from Electronic Annotation
more info
 
involved_in mRNA splicing, via spliceosome IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
part_of ASAP complex IBA
Inferred from Biological aspect of Ancestor
more info
 
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in nuclear speck IEA
Inferred from Electronic Annotation
more info
 
is_active_in nucleoplasm IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
RNA-binding protein with serine-rich domain 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_199761.2NP_956055.2  RNA-binding protein with serine-rich domain 1

    Status: VALIDATED

    Source sequence(s)
    FO904885
    UniProtKB/TrEMBL
    A0A0G2KGY0
    Related
    ENSDARP00000144842.1, ENSDART00000182191.1
    Conserved Domains (1) summary
    cd12365
    Location:139212
    RRM_RNPS1; RNA recognition motif in RNA-binding protein with serine-rich domain 1 (RNPS1) and similar proteins

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007114.7 Reference GRCz11 Primary Assembly

    Range
    9432448..9444068 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 Primary Assembly

Genomic

  1. NW_008805347.1 Reference GRCz11 Primary Assembly

    Range
    88804..101227
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009298275.3XP_009296550.1  

    See identical proteins and their annotated locations for XP_009296550.1

    UniProtKB/TrEMBL
    A0A0G2KGY0
    Related
    ENSDARP00000131565.1, ENSDART00000163341.2
    Conserved Domains (1) summary
    cd12365
    Location:139212
    RRM_RNPS1; RNA recognition motif in RNA-binding protein with serine-rich domain 1 (RNPS1) and similar proteins

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394546.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    39810..51739 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)