slc52a2 solute carrier family 52 member 2 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: slc52a2provided by ZNC
Official Full Name: solute carrier family 52 member 2provided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-2552
See related: Ensembl:ENSDARG00000070800 Ensembl:ENSDARG00000102035 AllianceGenome:ZFIN:ZDB-GENE-030131-2552
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fc11c06; zgc:63774; wu:fc11c06
Summary: Predicted to enable riboflavin transmembrane transporter activity. Predicted to be involved in riboflavin transport. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Human ortholog(s) of this gene implicated in Brown-Vialetto-Van Laere syndrome 2. Orthologous to human SLC52A2 (solute carrier family 52 member 2). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: all
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Genomic context

Location:: chromosome: 19

Exon count:: 7

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	19	NC_007130.7 (22333321..22346602, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	19	NC_007130.6 (22748998..22762276, complement)

Chromosome 19 - NC_007130.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

fi73g01.x1 (e-PCR)
- UniSTS:197945

fc11c06.x1 (e-PCR)
- UniSTS:192507

fc11c06.x1 (e-PCR)
- UniSTS:192508

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables 3'-5'-RNA exonuclease activity	IEA Inferred from Electronic Annotation more info
enables riboflavin transmembrane transporter activity	IBA Inferred from Biological aspect of Ancestor more info
enables riboflavin transmembrane transporter activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in riboflavin transport	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within riboflavin transport	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info
is_active_in plasma membrane	IBA Inferred from Biological aspect of Ancestor more info
located_in plasma membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: solute carrier family 52, riboflavin transporter, member 2; riboflavin transporter 1

Names: gpr172a; solute carrier family 52 (riboflavin transporter), member 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.