taf9 TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: taf9provided by ZNC
Official Full Name: TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factorprovided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-204
See related: Ensembl:ENSDARG00000077870 AllianceGenome:ZFIN:ZDB-GENE-030131-204
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: TAF2G; im:7089279; wu:fb16h03; zgc:153410
Summary: Predicted to enable transcription coactivator activity. Predicted to contribute to RNA polymerase II general transcription initiation factor activity. Predicted to be involved in RNA polymerase II preinitiation complex assembly and histone H3 acetylation. Predicted to act upstream of or within DNA-templated transcription, initiation. Predicted to be part of SAGA complex and transcription factor TFIID complex. Orthologous to several human genes including TAF9 (TATA-box binding protein associated factor 9). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: all
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Genomic context

Location:: chromosome: 21

Exon count:: 7

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	21	NC_007132.7 (38724046..38730641, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	21	NC_007132.6 (38676340..38682935, complement)

Chromosome 21 - NC_007132.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

AI397123 (e-PCR)
- UniSTS:206675

fb16h03.x1 (e-PCR)
- UniSTS:202976

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
contributes_to RNA polymerase II general transcription initiation factor activity	IBA Inferred from Biological aspect of Ancestor more info
enables adenylate kinase activity	IEA Inferred from Electronic Annotation more info
enables protein heterodimerization activity	IEA Inferred from Electronic Annotation more info
enables transcription coactivator activity	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within DNA-templated transcription initiation	IEA Inferred from Electronic Annotation more info
involved_in RNA polymerase II preinitiation complex assembly	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
part_of SAGA complex	IBA Inferred from Biological aspect of Ancestor more info
part_of transcription factor TFIID complex	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: transcription initiation factor TFIID subunit 9

NP_001037860.2

EC 2.7.4.3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001044395.2 → NP_001037860.2 transcription initiation factor TFIID subunit 9

Status: VALIDATED

Source sequence(s)

EH498335, EH555285

UniProtKB/TrEMBL

A0A8M1N969, F1QDT4

Related

ENSDARP00000098102.2, ENSDART00000111885.4

Conserved Domains (1) summary

pfam02291
Location:4 → 124

TFIID-31kDa; Transcription initiation factor IID, 31kD subunit