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Rassf7 Ras association domain family member 7 [ Rattus norvegicus (Norway rat) ]

Gene ID: 293623, updated on 3-Apr-2024

Summary

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Official Symbol
Rassf7provided by RGD
Official Full Name
Ras association domain family member 7provided by RGD
Primary source
RGD:1306244
See related
Ensembl:ENSRNOG00000017109 AllianceGenome:RGD:1306244
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1306244
Summary
Predicted to be involved in regulation of microtubule cytoskeleton organization and signal transduction. Predicted to be located in centriolar satellite. Orthologous to human RASSF7 (Ras association domain family member 7). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Kidney (RPKM 103.7), Lung (RPKM 94.4) and 7 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
1q41
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (205749173..205753350)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (196319600..196323787)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (214202722..214205799)

Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene HRas proto-oncogene, GTPase Neighboring gene leucine rich repeat containing 56 Neighboring gene lamin tail domain containing 2 Neighboring gene uncharacterized LOC102553043 Neighboring gene microRNA 3574 Neighboring gene microRNA 210 Neighboring gene PHD and ring finger domains 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in centriolar satellite IEA
Inferred from Electronic Annotation
more info
  
located_in centriolar satellite ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
ras association domain-containing protein 7
Names
Ras association (RalGDS/AF-6) domain family (N-terminal) member 7
Ras association (RalGDS/AF-6) domain family 7

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001106317.2 → NP_001099787.1  ras association domain-containing protein 7

    See identical proteins and their annotated locations for NP_001099787.1

    Status: PROVISIONAL

    Source sequence(s)
    BC158743
    UniProtKB/TrEMBL
    A0A8I6A120, B0BNA2
    Related
    ENSRNOP00000023219.5, ENSRNOT00000023219.6
    Conserved Domains (2) summary
    COG0419
    Location:157 → 296
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    cd16135
    Location:8 → 90
    RA_RASSF7; Ras-associating (RA) domain found in N-terminal Ras-association domain family 7 (RASSF7)

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086019.1 Reference GRCr8

    Range
    205749173..205753350
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063286575.1 → XP_063142645.1  ras association domain-containing protein 7 isoform X1

    UniProtKB/TrEMBL
    B0BNA2

  2. XM_006230537.5 → XP_006230599.1  ras association domain-containing protein 7 isoform X1

    See identical proteins and their annotated locations for XP_006230599.1

    UniProtKB/TrEMBL
    A0A8I6A120, B0BNA2
    Conserved Domains (2) summary
    COG0419
    Location:157 → 296
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    cd16135
    Location:8 → 90
    RA_RASSF7; Ras-associating (RA) domain found in N-terminal Ras-association domain family 7 (RASSF7)

  3. XM_006230539.5 → XP_006230601.1  ras association domain-containing protein 7 isoform X1

    See identical proteins and their annotated locations for XP_006230601.1

    UniProtKB/TrEMBL
    A0A8I6A120, B0BNA2
    Conserved Domains (2) summary
    COG0419
    Location:157 → 296
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    cd16135
    Location:8 → 90
    RA_RASSF7; Ras-associating (RA) domain found in N-terminal Ras-association domain family 7 (RASSF7)
Nucleotide Protein Strain
Heading Accession and Version

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