U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Chst9 carbohydrate sulfotransferase 9 [ Rattus norvegicus (Norway rat) ]

Gene ID: 291770, updated on 3-Apr-2024

Summary

Go to the top of the page Help
Official Symbol
Chst9provided by RGD
Official Full Name
carbohydrate sulfotransferase 9provided by RGD
Primary source
RGD:1307302
See related
Ensembl:ENSRNOG00000015867 AllianceGenome:RGD:1307302
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to enable N-acetylgalactosamine 4-O-sulfotransferase activity. Predicted to be involved in proteoglycan biosynthetic process and sulfur compound metabolic process. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Orthologous to human CHST9 (carbohydrate sulfotransferase 9). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Kidney (RPKM 35.8), Liver (RPKM 15.5) and 4 other tissues See more
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
18p13
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 18 NC_086036.1 (6850874..7125222, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 18 NC_051353.1 (6576391..6851078, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 18 NC_005117.4 (6833408..7115815, complement)

Chromosome 18 - NC_086036.1Genomic Context describing neighboring genes Neighboring gene rRNA 2'-O-methyltransferase fibrillarin-like Neighboring gene uncharacterized LOC134482912 Neighboring gene uncharacterized LOC134482913 Neighboring gene uncharacterized LOC108348751 Neighboring gene prohibitin 1, pseudogene 12

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Molecular cloning and expression of an N-acetylgalactosamine-4-O-sulfotransferase that transfers sulfate to terminal and non-terminal beta 1,4-linked N-acetylgalactosamine. Kang HG, et al. J Biol Chem, 2001 Apr 6. PMID 11139592
  2. Mouse N-acetylgalactosamine 4-sulfotransferases-1 and -2. Molecular cloning, expression, chromosomal mapping and detection of their activity with GalNAcbeta1-4GlcNAcbeta1-octyl. Okuda T, et al. J Biochem, 2003 Jul. PMID 12944377
  3. Molecular cloning and expression of two distinct human N-acetylgalactosamine 4-O-sulfotransferases that transfer sulfate to GalNAc beta 1-->4GlcNAc beta 1-->R in both N- and O-glycans. Hiraoka N, et al. Glycobiology, 2001 Jun. PMID 11445554
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

Go to the top of the page

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables N-acetylgalactosamine 4-O-sulfotransferase activity ISO
Inferred from Sequence Orthology
more info
  
enables sulfotransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in carbohydrate biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
involved_in proteoglycan biosynthetic process IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in sulfur compound metabolic process ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
carbohydrate sulfotransferase 9
Names
carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9
NP_001163941.1
XP_008770158.2
XP_017456411.1
XP_063133334.1
XP_063133335.1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001170470.1 → NP_001163941.1  carbohydrate sulfotransferase 9

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000018
    UniProtKB/TrEMBL
    F1M862
    Related
    ENSRNOP00000021253.6, ENSRNOT00000021253.7
    Conserved Domains (1) summary
    pfam03567
    Location:180 → 409
    Sulfotransfer_2; Sulfotransferase family

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086036.1 Reference GRCr8

    Range
    6850874..7125222 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017600922.3 → XP_017456411.1  carbohydrate sulfotransferase 9 isoform X1

    UniProtKB/TrEMBL
    F1M862
    Conserved Domains (1) summary
    pfam03567
    Location:180 → 409
    Sulfotransfer_2; Sulfotransferase family

  2. XM_063277265.1 → XP_063133335.1  carbohydrate sulfotransferase 9 isoform X2

    UniProtKB/TrEMBL
    A0A8I5ZVI1

  3. XM_063277264.1 → XP_063133334.1  carbohydrate sulfotransferase 9 isoform X1

    UniProtKB/TrEMBL
    F1M862

  4. XM_008771936.4 → XP_008770158.2  carbohydrate sulfotransferase 9 isoform X2

    UniProtKB/TrEMBL
    A0A8I5ZVI1
    Related
    ENSRNOP00000082918.1
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Chemical Information
Molecular Biology Databases
Research Materials
Tools
Miscellaneous