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clfA clumping factor [ Staphylococcus aureus subsp. aureus MRSA252 ]

Gene ID: 2859231, discontinued on 3-Feb-2015
  • All Gene records for this genome have been discontinued due to a change in scope for prokaryotic genomes in Gene. At the time this Gene record was discontinued, the RefSeq genome was re-annotated with the following features at this location:

Summary

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Gene symbol
clfA
Gene description
clumping factor
Locus tag
SAR0842
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Staphylococcus aureus subsp. aureus MRSA252 (strain: MRSA252, sub-species: aureus MRSA252)
Lineage
Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus
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Genomic regions, transcripts, and products

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Genomic Sequence:
NC_002952.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Miscellaneous features

  • Loc: 888284-888337 1 probable transmembrane helix predicted for SAR0842 by TMHMM2.0 at aa 16-33
  • Loc: 889787-889873 PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.
  • Loc: 891212-891229 PS00343 Gram-positive cocci surface proteins 'anchoring' hexapeptide.

General protein information

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Names
clumping factor
YP_040268.1
  • Previously sequenced as Staphylococcus aureus clumping factor ClfA TR:Q53653 (EMBL:Z18852) (933 aa) fasta scores: E(): 2.3e-215, 86.297% id in 1029 aa. Similar to the C-terminal region of Staphylococcus epidermidis cell-surface adhesin SdrF TR:Q9KI14 (EMBL:AF245041) (1733 aa) fasta scores: E(): 1.5e-94, 46.230% id in 1008 aa. Contains an inperfect dipetide repeat (SD x181), residues 599 to 960. CDS contains extra copies of the dipeptide repeat compared to the previously sequenced clumping factor ClfA. Probable LPXTG-sorted surface protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_002952.2 Reference assembly

    Range
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_040268.1 clumping factor [Staphylococcus aureus subsp. aureus MRSA252]

    Status: PROVISIONAL

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6GIK4.1

Gene LinkOut

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