Or10d4b olfactory receptor family 10 subfamily D member 4B [Mus musculus (house mouse)] - Gene

Summary

Official Symbol: Or10d4bprovided by MGI
Official Full Name: olfactory receptor family 10 subfamily D member 4Bprovided by MGI
Primary source: MGI:MGI:3030794
See related: Ensembl:ENSMUSG00000059867 AllianceGenome:MGI:3030794
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Mus musculus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as: Olfr960; MOR224-12
Summary: Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]
Expression: Low expression observed in reference dataset See more
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Genomic context

Location:: 9 A5.1; 9 20.98 cM

Exon count:: 2

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCm39 (GCF_000001635.27)	9	NC_000075.7 (39534421..39535461)
108.20200622	previous assembly	GRCm38.p6 (GCF_000001635.26)	9	NC_000075.6 (39623125..39624165)

Chromosome 9 - NC_000075.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Mouse ENCODE transcriptome data
Description: RNA profiling data sets generated by the Mouse ENCODE project.
BioProject: PRJNA66167
Publication: PMID 25409824
Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

UniSTS:489308 (e-PCR)
- UniSTS:489308

NoName (e-PCR)
- UniSTS:494292

Gene Ontology Provided by MGI

Function	Evidence Code	Pubs
enables olfactory receptor activity	IBA Inferred from Biological aspect of Ancestor more info
enables olfactory receptor activity	IDA Inferred from Direct Assay more info	PubMed
enables olfactory receptor activity	ISA Inferred from Sequence Alignment more info	PubMed

Process	Evidence Code	Pubs
acts_upstream_of_or_within G protein-coupled receptor signaling pathway	ISA Inferred from Sequence Alignment more info	PubMed
involved_in detection of chemical stimulus involved in sensory perception of smell	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within sensory perception of smell	ISA Inferred from Sequence Alignment more info	PubMed

Component	Evidence Code	Pubs
located_in membrane	ISA Inferred from Sequence Alignment more info	PubMed
is_active_in plasma membrane	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: olfactory receptor family 10 subfamily D member 4B

Names: GA_x6K02T2PVTD-33320043-33320987; olfactory receptor 960; olfactory receptor MOR224-12

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_146279.1 → NP_666391.1 olfactory receptor family 10 subfamily D member 4B

See identical proteins and their annotated locations for NP_666391.1

Status: PROVISIONAL

Source sequence(s)

AY073814

Consensus CDS

CCDS23054.1

UniProtKB/TrEMBL

Q8VET5, Q9EQ85

Related

ENSMUSP00000076315.3, ENSMUST00000077060.3

Conserved Domains (2) summary

pfam00001
Location:48 → 288

7tm_1; 7 transmembrane receptor (rhodopsin family)

cl21561
Location:31 → 306

7tm_4; Olfactory receptor

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

NC_000075.7 Reference GRCm39 C57BL/6J

Range

39534421..39535461

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_017313388.1 → XP_017168877.1 olfactory receptor family 10 subfamily D member 4B isoform X1

Conserved Domains (2) summary

cd14964
Location:26 → 52

7tm_GPCRs; TM helix 1 [structural motif]

cl28897
Location:25 → 173

7tm_GPCRs; seven-transmembrane G protein-coupled receptor superfamily