Gys2 glycogen synthase 2 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Gys2provided by RGD
Official Full Name: glycogen synthase 2provided by RGD
Primary source: RGD:2773
See related: Ensembl:ENSRNOG00000059753 AllianceGenome:RGD:2773
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: GLYSN
Summary: Enables glucose binding activity and glycogen (starch) synthase activity. Involved in glycogen biosynthetic process and response to glucose. Located in cortical actin cytoskeleton; cytosol; and ectoplasm. Human ortholog(s) of this gene implicated in glycogen storage disease. Orthologous to human GYS2 (glycogen synthase 2). [provided by Alliance of Genome Resources, Apr 2022]
Expression: Biased expression in Liver (RPKM 213.1), Thymus (RPKM 72.0) and 2 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 4q44

Exon count:: 17

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	4	NC_086022.1 (177096063..177137236, complement)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	4	NC_051339.1 (175365054..175406228, complement)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	4	NC_005103.4 (176638632..176679805, complement)

Chromosome 4 - NC_086022.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Transgenic LGS rat showed enhanced glycogen storage and an mproved glucose tolerance.
Title: Hepatic overexpression of a constitutively active form of liver glycogen synthase improves glucose homeostasis.
LGS translocation is strictly dependent on glycogen synthesis.
Title: Control of liver glycogen synthase activity and intracellular distribution by phosphorylation.
elevation of glycogen synthase activity has an inhibitory effect on glucose production in hepatocytes by shunting gluconeogenic precursors into glycogen.
Title: Metabolic impact of overexpression of liver glycogen synthase with serine-to-alanine substitutions in rat primary hepatocytes.
bile acids are physiological regulators of glycogen synthase in rat liver and conjugated bile acids use a Galpha(i)-coupled G protein-coupled receptor to regulate GS activity in vitro and in vivo
Title: Conjugated bile acids regulate hepatocyte glycogen synthase activity in vitro and in vivo via Galphai signaling.
glycogen synthase is activated by glucose-6-phosphate, which also controls its subcellular distribution in the hepatocyte
Title: Glucose 6-phosphate produced by gluconeogenesis and by glucokinase is equally effective in activating hepatic glycogen synthase.

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General gene information

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Markers

RH133339 (e-PCR)
- UniSTS:216622

Gys2 (e-PCR), detects polymorphism
- UniSTS:526044

RH142415 (e-PCR)
- UniSTS:231662

Gene Ontology Provided by RGD

Function	Evidence Code	Pubs
enables glucose binding	IDA Inferred from Direct Assay more info	PubMed
enables glycogen (starch) synthase activity	IBA Inferred from Biological aspect of Ancestor more info
enables glycogen (starch) synthase activity	IDA Inferred from Direct Assay more info	PubMed
enables glycogen (starch) synthase activity	IEA Inferred from Electronic Annotation more info
enables glycogen (starch) synthase activity	ISO Inferred from Sequence Orthology more info

Process	Evidence Code	Pubs
involved_in glycogen biosynthetic process	IBA Inferred from Biological aspect of Ancestor more info
involved_in glycogen biosynthetic process	IDA Inferred from Direct Assay more info	PubMed
involved_in glycogen biosynthetic process	IEA Inferred from Electronic Annotation more info
involved_in glycogen biosynthetic process	ISO Inferred from Sequence Orthology more info
involved_in glycogen metabolic process	IDA Inferred from Direct Assay more info	PubMed
involved_in response to glucose	IDA Inferred from Direct Assay more info	PubMed

Component	Evidence Code	Pubs
located_in cell cortex	IDA Inferred from Direct Assay more info	PubMed
located_in cortical actin cytoskeleton	IDA Inferred from Direct Assay more info	PubMed
is_active_in cytoplasm	IBA Inferred from Biological aspect of Ancestor more info
located_in cytoplasm	IDA Inferred from Direct Assay more info	PubMed
located_in cytoskeleton	IDA Inferred from Direct Assay more info	PubMed
located_in cytosol	IDA Inferred from Direct Assay more info	PubMed
located_in cytosol	IEA Inferred from Electronic Annotation more info
is_active_in cytosol	ISO Inferred from Sequence Orthology more info

General protein information

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Preferred Names: glycogen [starch] synthase, liver

Names: Glycogen synthase 2 (liver)

NP_037221.2

EC 2.4.1.11

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_013089.2 → NP_037221.2 glycogen [starch] synthase, liver

Status: VALIDATED

Source sequence(s)

JAXUCZ010000004

UniProtKB/Swiss-Prot

P17625, Q99MF8

UniProtKB/TrEMBL

D4A5K9

Related

ENSRNOP00000074743.1, ENSRNOT00000090122.2

Conserved Domains (2) summary

cd03793
Location:27 → 615

GT1_Glycogen_synthase_GSY2_like; Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the ...

pfam05693
Location:32 → 660

Glycogen_syn; Glycogen synthase