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Ptpn11 protein tyrosine phosphatase, non-receptor type 11 [ Rattus norvegicus (Norway rat) ]

Gene ID: 25622, updated on 11-Apr-2024

Summary

Official Symbol
Ptpn11provided by RGD
Official Full Name
protein tyrosine phosphatase, non-receptor type 11provided by RGD
Primary source
RGD:3447
See related
Ensembl:ENSRNOG00000030124 AllianceGenome:RGD:3447
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Shp2
Summary
Enables several functions, including insulin receptor substrate binding activity; phospholipase binding activity; and signaling receptor binding activity. Involved in several processes, including cellular response to mechanical stimulus; cellular response to peptide hormone stimulus; and positive regulation of focal adhesion assembly. Located in cytosol; mitochondrion; and plasma membrane raft. Part of protein-containing complex. Used to study glaucoma. Biomarker of glaucoma. Human ortholog(s) of this gene implicated in several diseases, including Noonan syndrome (multiple); Noonan syndrome with multiple lentigines 1; atrophic gastritis; juvenile myelomonocytic leukemia; and metachondromatosis. Orthologous to human PTPN11 (protein tyrosine phosphatase non-receptor type 11). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Heart (RPKM 599.9), Muscle (RPKM 483.6) and 9 other tissues See more
Orthologs
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Genomic context

Location:
12q16
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 12 NC_086030.1 (41026079..41085577)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 12 NC_051347.1 (35365436..35424925)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 12 NC_005111.4 (40895515..40955999)

Chromosome 12 - NC_086030.1Genomic Context describing neighboring genes Neighboring gene HECT domain E3 ubiquitin protein ligase 4 Neighboring gene TRAF type zinc finger domain containing 1 Neighboring gene small nucleolar RNA SNORA42/SNORA80 family Neighboring gene ribosomal protein L6 Neighboring gene uncharacterized LOC134481334 Neighboring gene rabphilin 3A

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables D1 dopamine receptor binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 
enables cadherin binding ISO
Inferred from Sequence Orthology
more info
 
enables cell adhesion molecule binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables cell adhesion molecule binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables cell adhesion molecule binding ISO
Inferred from Sequence Orthology
more info
 
enables insulin receptor binding IDA
Inferred from Direct Assay
more info
PubMed 
enables insulin receptor binding IEA
Inferred from Electronic Annotation
more info
 
enables insulin receptor binding ISO
Inferred from Sequence Orthology
more info
 
enables insulin receptor substrate binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables molecular adaptor activity ISO
Inferred from Sequence Orthology
more info
 
enables non-membrane spanning protein tyrosine phosphatase activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables non-membrane spanning protein tyrosine phosphatase activity IEA
Inferred from Electronic Annotation
more info
 
enables non-membrane spanning protein tyrosine phosphatase activity ISO
Inferred from Sequence Orthology
more info
 
enables non-membrane spanning protein tyrosine phosphatase activity ISS
Inferred from Sequence or Structural Similarity
more info
 
enables peptide hormone receptor binding IEA
Inferred from Electronic Annotation
more info
 
enables peptide hormone receptor binding ISO
Inferred from Sequence Orthology
more info
 
enables phospholipase binding IDA
Inferred from Direct Assay
more info
PubMed 
enables phosphoprotein phosphatase activity ISO
Inferred from Sequence Orthology
more info
 
enables phosphotyrosine residue binding IEA
Inferred from Electronic Annotation
more info
 
enables phosphotyrosine residue binding ISO
Inferred from Sequence Orthology
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables protein domain specific binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables protein kinase binding ISO
Inferred from Sequence Orthology
more info
 
enables protein tyrosine kinase binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables protein tyrosine kinase binding ISO
Inferred from Sequence Orthology
more info
 
enables protein tyrosine phosphatase activity IDA
Inferred from Direct Assay
more info
PubMed 
enables protein tyrosine phosphatase activity ISO
Inferred from Sequence Orthology
more info
 
enables receptor tyrosine kinase binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables receptor tyrosine kinase binding IEA
Inferred from Electronic Annotation
more info
 
enables receptor tyrosine kinase binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables receptor tyrosine kinase binding ISO
Inferred from Sequence Orthology
more info
 
enables signaling receptor complex adaptor activity IEA
Inferred from Electronic Annotation
more info
 
enables signaling receptor complex adaptor activity ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
involved_in Bergmann glial cell differentiation IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within Bergmann glial cell differentiation ISO
Inferred from Sequence Orthology
more info
 
involved_in DNA damage checkpoint signaling IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within DNA damage checkpoint signaling ISO
Inferred from Sequence Orthology
more info
 
involved_in ERBB signaling pathway ISO
Inferred from Sequence Orthology
more info
 
involved_in atrioventricular canal development IEA
Inferred from Electronic Annotation
more info
 
involved_in atrioventricular canal development ISO
Inferred from Sequence Orthology
more info
 
involved_in axonogenesis IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within axonogenesis ISO
Inferred from Sequence Orthology
more info
 
involved_in brain development ISO
Inferred from Sequence Orthology
more info
 
involved_in cellular response to angiotensin IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in cellular response to epidermal growth factor stimulus IEA
Inferred from Electronic Annotation
more info
 
involved_in cellular response to epidermal growth factor stimulus ISO
Inferred from Sequence Orthology
more info
 
involved_in cellular response to epidermal growth factor stimulus ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in cellular response to hydrogen peroxide IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in cellular response to insulin-like growth factor stimulus IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in cellular response to mechanical stimulus IPI
Inferred from Physical Interaction
more info
PubMed 
involved_in cellular response to organic substance IEA
Inferred from Electronic Annotation
more info
 
involved_in cerebellar cortex formation IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within cerebellar cortex formation ISO
Inferred from Sequence Orthology
more info
 
involved_in ephrin receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 
involved_in ephrin receptor signaling pathway ISO
Inferred from Sequence Orthology
more info
 
involved_in ephrin receptor signaling pathway ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in epidermal growth factor receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within epidermal growth factor receptor signaling pathway ISO
Inferred from Sequence Orthology
more info
 
involved_in epidermal growth factor receptor signaling pathway ISO
Inferred from Sequence Orthology
more info
 
involved_in face morphogenesis IEA
Inferred from Electronic Annotation
more info
 
involved_in face morphogenesis ISO
Inferred from Sequence Orthology
more info
 
involved_in fibroblast growth factor receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 
involved_in fibroblast growth factor receptor signaling pathway ISO
Inferred from Sequence Orthology
more info
 
involved_in genitalia development IEA
Inferred from Electronic Annotation
more info
 
involved_in genitalia development ISO
Inferred from Sequence Orthology
more info
 
involved_in glucose homeostasis IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within glucose homeostasis ISO
Inferred from Sequence Orthology
more info
 
involved_in heart development ISO
Inferred from Sequence Orthology
more info
 
involved_in homeostasis of number of cells within a tissue IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within homeostasis of number of cells within a tissue ISO
Inferred from Sequence Orthology
more info
 
involved_in hormone metabolic process IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within hormone metabolic process ISO
Inferred from Sequence Orthology
more info
 
involved_in hormone-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within hormone-mediated signaling pathway ISO
Inferred from Sequence Orthology
more info
 
involved_in inner ear development IEA
Inferred from Electronic Annotation
more info
 
involved_in inner ear development ISO
Inferred from Sequence Orthology
more info
 
involved_in integrin-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within integrin-mediated signaling pathway ISO
Inferred from Sequence Orthology
more info
 
involved_in intestinal epithelial cell migration IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within intestinal epithelial cell migration ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within lipid metabolic process ISO
Inferred from Sequence Orthology
more info
 
involved_in megakaryocyte development IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within megakaryocyte development ISO
Inferred from Sequence Orthology
more info
 
involved_in microvillus organization IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within microvillus organization ISO
Inferred from Sequence Orthology
more info
 
involved_in multicellular organism growth IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within multicellular organism growth ISO
Inferred from Sequence Orthology
more info
 
involved_in multicellular organismal reproductive process IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within multicellular organismal reproductive process ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of cell adhesion mediated by integrin IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within negative regulation of cell adhesion mediated by integrin ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of chondrocyte differentiation IEA
Inferred from Electronic Annotation
more info
 
involved_in negative regulation of chondrocyte differentiation ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of chondrocyte differentiation ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in negative regulation of cortisol secretion IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within negative regulation of cortisol secretion ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of growth hormone secretion IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within negative regulation of growth hormone secretion ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within negative regulation of hormone secretion ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of insulin secretion IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within negative regulation of insulin secretion ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of type I interferon production IEA
Inferred from Electronic Annotation
more info
 
involved_in negative regulation of type I interferon production ISO
Inferred from Sequence Orthology
more info
 
involved_in neurotrophin TRK receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within neurotrophin TRK receptor signaling pathway ISO
Inferred from Sequence Orthology
more info
 
involved_in organ growth IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within organ growth ISO
Inferred from Sequence Orthology
more info
 
involved_in platelet formation IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within platelet formation ISO
Inferred from Sequence Orthology
more info
 
involved_in platelet-derived growth factor receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within platelet-derived growth factor receptor signaling pathway ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of ERK1 and ERK2 cascade IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in positive regulation of ERK1 and ERK2 cascade IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within positive regulation of ERK1 and ERK2 cascade ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of ERK1 and ERK2 cascade ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of ERK1 and ERK2 cascade ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in positive regulation of focal adhesion assembly IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of glucose import IEA
Inferred from Electronic Annotation
more info
 
involved_in positive regulation of glucose import ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of hormone secretion IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within positive regulation of hormone secretion ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of insulin receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 
involved_in positive regulation of insulin receptor signaling pathway ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of interferon-beta production IEA
Inferred from Electronic Annotation
more info
 
involved_in positive regulation of interferon-beta production ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of interleukin-6 production IEA
Inferred from Electronic Annotation
more info
 
involved_in positive regulation of interleukin-6 production ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of mitotic cell cycle IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within positive regulation of mitotic cell cycle ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of ossification IEA
Inferred from Electronic Annotation
more info
 
involved_in positive regulation of ossification ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of ossification ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in positive regulation of peptidyl-tyrosine phosphorylation IEA
Inferred from Electronic Annotation
more info
 
involved_in positive regulation of peptidyl-tyrosine phosphorylation ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within positive regulation of signal transduction ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of tumor necrosis factor production IEA
Inferred from Electronic Annotation
more info
 
involved_in positive regulation of tumor necrosis factor production ISO
Inferred from Sequence Orthology
more info
 
involved_in protein dephosphorylation IBA
Inferred from Biological aspect of Ancestor
more info
 
acts_upstream_of_or_within regulation of MAPK cascade ISO
Inferred from Sequence Orthology
more info
 
involved_in regulation of cell adhesion mediated by integrin ISO
Inferred from Sequence Orthology
more info
 
involved_in regulation of cell adhesion mediated by integrin ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in regulation of protein export from nucleus IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within regulation of protein export from nucleus ISO
Inferred from Sequence Orthology
more info
 
involved_in regulation of protein-containing complex assembly IEA
Inferred from Electronic Annotation
more info
 
involved_in regulation of protein-containing complex assembly ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of signal transduction ISO
Inferred from Sequence Orthology
more info
 
involved_in smooth muscle cell proliferation IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in triglyceride metabolic process IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within triglyceride metabolic process ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in cytoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in cytosol TAS
Traceable Author Statement
more info
 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 
located_in nucleus ISO
Inferred from Sequence Orthology
more info
 
located_in nucleus ISS
Inferred from Sequence or Structural Similarity
more info
 
located_in plasma membrane raft IDA
Inferred from Direct Assay
more info
PubMed 
part_of protein-containing complex IDA
Inferred from Direct Assay
more info
PubMed 
part_of protein-containing complex IEA
Inferred from Electronic Annotation
more info
 
part_of protein-containing complex ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
tyrosine-protein phosphatase non-receptor type 11
Names
PTP-1D
SH-PTP2 protein tyrosine phosphatase, non-receptor type 11
SHP-2
encodes catalytic domain
protein tyrosine phosphatase SH-PTP2
protein-tyrosine phosphatase 1D
protein-tyrosine phosphatase SYP
NP_001171064.1
NP_037220.2

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001177593.1NP_001171064.1  tyrosine-protein phosphatase non-receptor type 11 isoform 1

    See identical proteins and their annotated locations for NP_001171064.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    JAXUCZ010000012
    UniProtKB/TrEMBL
    A0A8L2ULP1
    Conserved Domains (4) summary
    cd09931
    Location:111218
    SH2_C-SH2_SHP_like; C-terminal Src homology 2 (C-SH2) domain found in SH2 domain Phosphatases (SHP) proteins
    cd10340
    Location:5103
    SH2_N-SH2_SHP_like; N-terminal Src homology 2 (N-SH2) domain found in SH2 domain Phosphatases (SHP) proteins
    smart00194
    Location:246524
    PTPc; Protein tyrosine phosphatase, catalytic domain
    cd00047
    Location:276523
    PTPc; Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr ...
  2. NM_013088.2NP_037220.2  tyrosine-protein phosphatase non-receptor type 11 isoform 2

    See identical proteins and their annotated locations for NP_037220.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate in-frame splice site in the central coding region, compared to variant 1. The resulting isoform (2) lacks an internal 4-aa segment, compared to isoform 1.
    Source sequence(s)
    JAXUCZ010000012
    UniProtKB/Swiss-Prot
    P41499, Q62626
    UniProtKB/TrEMBL
    A0A8L2ULP1, A6J1G3
    Related
    ENSRNOP00000041842.6, ENSRNOT00000046323.6
    Conserved Domains (3) summary
    cd09931
    Location:111218
    SH2_C-SH2_SHP_like; C-terminal Src homology 2 (C-SH2) domain found in SH2 domain Phosphatases (SHP) proteins
    cd10340
    Location:5103
    SH2_N-SH2_SHP_like; N-terminal Src homology 2 (N-SH2) domain found in SH2 domain Phosphatases (SHP) proteins
    cd14605
    Location:272524
    PTPc-N11; catalytic domain of tyrosine-protein phosphatase non-receptor type 11

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086030.1 Reference GRCr8

    Range
    41026079..41085577
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)