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Ptk2 protein tyrosine kinase 2 [ Rattus norvegicus (Norway rat) ]

Gene ID: 25614, updated on 11-Apr-2024

Summary

Official Symbol
Ptk2provided by RGD
Official Full Name
protein tyrosine kinase 2provided by RGD
Primary source
RGD:3443
See related
Ensembl:ENSRNOG00000007916 AllianceGenome:RGD:3443
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
FAK; FRNK; p125FAK
Summary
Enables several functions, including identical protein binding activity; integrin binding activity; and phosphatidylinositol 3-kinase binding activity. Involved in several processes, including cellular chloride ion homeostasis; positive regulation of cell population proliferation; and regulation of cell migration. Located in several cellular components, including basolateral plasma membrane; focal adhesion; and nuclear lumen. Is active in glutamatergic synapse and postsynapse. Used to study hepatocellular carcinoma; hypertension; and nephritis. Biomarker of hypertension; ischemia; and uremia. Human ortholog(s) of this gene implicated in leiomyoma; lung small cell carcinoma; and pulmonary hypertension. Orthologous to human PTK2 (protein tyrosine kinase 2). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Lung (RPKM 307.3), Kidney (RPKM 290.5) and 9 other tissues See more
Orthologs
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Genomic context

Location:
7q34
Exon count:
44
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 7 NC_086025.1 (107015730..107220865, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 7 NC_051342.1 (105126725..105331848, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (114436419..114611317, complement)

Chromosome 7 - NC_086025.1Genomic Context describing neighboring genes Neighboring gene chromatin accessibility complex subunit 1 Neighboring gene uncharacterized LOC134479922 Neighboring gene argonaute RISC catalytic component 2 Neighboring gene microRNA 151b Neighboring gene microRNA 151 Neighboring gene uncharacterized LOC134479923 Neighboring gene small nucleolar RNA SNORA8 Neighboring gene ribosomal protein L36 like 1 Neighboring gene DENN domain containing 3

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 
enables JUN kinase binding ISO
Inferred from Sequence Orthology
more info
 
enables SH2 domain binding ISO
Inferred from Sequence Orthology
more info
 
enables actin binding ISO
Inferred from Sequence Orthology
more info
 
enables identical protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables integrin binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables integrin binding ISO
Inferred from Sequence Orthology
more info
 
enables molecular function activator activity ISO
Inferred from Sequence Orthology
more info
 
enables non-membrane spanning protein tyrosine kinase activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables non-membrane spanning protein tyrosine kinase activity IEA
Inferred from Electronic Annotation
more info
 
enables non-membrane spanning protein tyrosine kinase activity ISO
Inferred from Sequence Orthology
more info
 
enables non-membrane spanning protein tyrosine kinase activity ISS
Inferred from Sequence or Structural Similarity
more info
 
enables phosphatase binding IDA
Inferred from Direct Assay
more info
PubMed 
enables phosphatidylinositol 3-kinase binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables protein kinase binding ISO
Inferred from Sequence Orthology
more info
 
enables protein phosphatase binding ISO
Inferred from Sequence Orthology
more info
 
enables protein tyrosine kinase activity IEA
Inferred from Electronic Annotation
more info
 
enables protein tyrosine kinase activity ISO
Inferred from Sequence Orthology
more info
 
enables protein tyrosine kinase activity ISS
Inferred from Sequence or Structural Similarity
more info
 
enables protein tyrosine kinase activity TAS
Traceable Author Statement
more info
PubMed 
enables protein tyrosine phosphatase activity ISO
Inferred from Sequence Orthology
more info
 
enables protein-containing complex binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
involved_in JNK cascade IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in MAPK cascade IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in angiogenesis IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within angiogenesis ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of axonogenesis ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within blood vessel development ISO
Inferred from Sequence Orthology
more info
 
involved_in cell migration ISO
Inferred from Sequence Orthology
more info
 
involved_in cellular response to morphine IEP
Inferred from Expression Pattern
more info
PubMed 
acts_upstream_of_or_within cellular response to transforming growth factor beta stimulus ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within central nervous system neuron axonogenesis ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within endothelial cell migration ISO
Inferred from Sequence Orthology
more info
 
involved_in ephrin receptor signaling pathway ISO
Inferred from Sequence Orthology
more info
 
involved_in ephrin receptor signaling pathway ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in epidermal growth factor receptor signaling pathway IBA
Inferred from Biological aspect of Ancestor
more info
 
acts_upstream_of_or_within extracellular matrix organization ISO
Inferred from Sequence Orthology
more info
 
involved_in fat cell differentiation IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in growth hormone receptor signaling pathway ISO
Inferred from Sequence Orthology
more info
 
involved_in integrin-mediated signaling pathway IDA
Inferred from Direct Assay
more info
PubMed 
involved_in integrin-mediated signaling pathway ISO
Inferred from Sequence Orthology
more info
 
involved_in integrin-mediated signaling pathway ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in intracellular chloride ion homeostasis IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within microtubule cytoskeleton organization ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of anoikis ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of apoptotic process IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in negative regulation of apoptotic process ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within negative regulation of autophagy ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within negative regulation of axonogenesis ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of cell migration IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in negative regulation of cell-cell adhesion ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within negative regulation of organ growth ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within negative regulation of synapse assembly ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within neuron migration ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within nuclear migration ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of organ growth ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within positive regulation of cardiac muscle hypertrophy ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of cell adhesion IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of cell growth IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of cell migration IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in positive regulation of cell migration IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of cell migration ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of cell population proliferation IEA
Inferred from Electronic Annotation
more info
 
involved_in positive regulation of cell population proliferation ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of cell population proliferation ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in positive regulation of epithelial cell migration ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of epithelial to mesenchymal transition ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of fibroblast migration ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of glial cell proliferation IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of positive regulation of macrophage chemotaxis ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of positive regulation of macrophage proliferation ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of phagocytosis IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in positive regulation of protein phosphorylation ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of protein phosphorylation ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in positive regulation of smooth muscle cell migration IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of smooth muscle cell proliferation IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of synaptic transmission IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of ubiquitin-dependent protein catabolic process ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of ubiquitin-dependent protein catabolic process ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in positive regulation of wound healing ISO
Inferred from Sequence Orthology
more info
 
involved_in protein phosphorylation IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in regulation of biological quality IEA
Inferred from Electronic Annotation
more info
 
involved_in regulation of cell adhesion IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in regulation of cell adhesion mediated by integrin ISO
Inferred from Sequence Orthology
more info
 
involved_in regulation of cell adhesion mediated by integrin ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in regulation of cell population proliferation ISO
Inferred from Sequence Orthology
more info
 
involved_in regulation of cell population proliferation ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in regulation of cell shape ISO
Inferred from Sequence Orthology
more info
 
involved_in regulation of cell shape ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in regulation of cellular component organization IEA
Inferred from Electronic Annotation
more info
 
involved_in regulation of epithelial cell migration ISO
Inferred from Sequence Orthology
more info
 
involved_in regulation of focal adhesion assembly ISO
Inferred from Sequence Orthology
more info
 
involved_in regulation of modification of postsynaptic actin cytoskeleton ISO
Inferred from Sequence Orthology
more info
 
involved_in regulation of multicellular organismal process IEA
Inferred from Electronic Annotation
more info
 
involved_in regulation of osteoblast differentiation ISO
Inferred from Sequence Orthology
more info
 
involved_in regulation of osteoblast differentiation ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in regulation of protein phosphorylation ISO
Inferred from Sequence Orthology
more info
 
involved_in regulation of substrate adhesion-dependent cell spreading ISO
Inferred from Sequence Orthology
more info
 
involved_in response to arsenic-containing substance IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in response to estradiol IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in response to glucose IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in response to mechanical stimulus IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in response to organic cyclic compound IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in response to organic substance IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in response to organonitrogen compound IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in response to xenobiotic stimulus IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in signal complex assembly IEA
Inferred from Electronic Annotation
more info
 
involved_in transforming growth factor beta receptor signaling pathway ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within vasculogenesis ISO
Inferred from Sequence Orthology
more info
 
involved_in vasodilation IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
located_in apical plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 
located_in apical plasma membrane ISO
Inferred from Sequence Orthology
more info
 
located_in basolateral plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 
located_in cell cortex IEA
Inferred from Electronic Annotation
more info
 
located_in cell projection IEA
Inferred from Electronic Annotation
more info
 
located_in centrosome IEA
Inferred from Electronic Annotation
more info
 
located_in ciliary basal body ISO
Inferred from Sequence Orthology
more info
 
located_in ciliary basal body ISS
Inferred from Sequence or Structural Similarity
more info
 
located_in cytoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 
located_in cytosol ISO
Inferred from Sequence Orthology
more info
 
located_in cytosol ISS
Inferred from Sequence or Structural Similarity
more info
 
is_active_in dendritic spine IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in dendritic spine IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in focal adhesion IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in focal adhesion IDA
Inferred from Direct Assay
more info
PubMed 
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
 
located_in focal adhesion ISO
Inferred from Sequence Orthology
more info
 
located_in focal adhesion TAS
Traceable Author Statement
more info
PubMed 
is_active_in glutamatergic synapse IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in glutamatergic synapse ISO
Inferred from Sequence Orthology
more info
 
located_in intercalated disc IDA
Inferred from Direct Assay
more info
PubMed 
located_in intracellular membrane-bounded organelle ISO
Inferred from Sequence Orthology
more info
 
located_in lamellipodium ISO
Inferred from Sequence Orthology
more info
 
located_in nuclear body IDA
Inferred from Direct Assay
more info
PubMed 
located_in nucleus ISO
Inferred from Sequence Orthology
more info
 
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 
located_in plasma membrane ISO
Inferred from Sequence Orthology
more info
 
is_active_in postsynapse IDA
Inferred from Direct Assay
more info
PubMed 
located_in sarcolemma IDA
Inferred from Direct Assay
more info
PubMed 
located_in stress fiber ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
focal adhesion kinase 1
Names
FADK 1
PTK2 protein tyrosine kinase 2
focal adhesion kinase-related nonkinase
pp125FAK
NP_037213.1
XP_038934403.1
XP_038934405.1
XP_038934408.1
XP_063119113.1
XP_063119114.1
XP_063119115.1
XP_063119116.1
XP_063119117.1
XP_063119118.1
XP_063119119.1
XP_063119120.1
XP_063119121.1
XP_063119122.1
XP_063119124.1
XP_063119125.1
XP_063119126.1
XP_063119127.1
XP_063119128.1
XP_063119129.1

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_013081.2NP_037213.1  focal adhesion kinase 1

    See identical proteins and their annotated locations for NP_037213.1

    Status: VALIDATED

    Source sequence(s)
    AF020777, AI717382, CA508631, CA511845, CB713440, EV773243, JAXUCZ010000007, U43942
    UniProtKB/Swiss-Prot
    O35346, Q62900
    UniProtKB/TrEMBL
    A0A8L2Q4U8
    Conserved Domains (5) summary
    cd05056
    Location:415684
    PTKc_FAK; Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase
    smart00295
    Location:36258
    B41; Band 4.1 homologues
    cd13190
    Location:254364
    FERM_C_FAK1; FERM domain C-lobe of Focal Adhesion Kinase 1 and 2
    pfam03623
    Location:9191048
    Focal_AT; Focal adhesion targeting region
    pfam18038
    Location:35130
    FERM_N_2; FERM N-terminal domain

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086025.1 Reference GRCr8

    Range
    107015730..107220865 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063263045.1XP_063119115.1  focal adhesion kinase 1 isoform X5

    UniProtKB/TrEMBL
    A0A8I6A8P2
  2. XM_063263051.1XP_063119121.1  focal adhesion kinase 1 isoform X7

    UniProtKB/TrEMBL
    A0A8I6AMW1
  3. XM_063263050.1XP_063119120.1  focal adhesion kinase 1 isoform X6

    UniProtKB/TrEMBL
    A0A0G2KAT5
  4. XM_063263043.1XP_063119113.1  focal adhesion kinase 1 isoform X1

  5. XM_063263047.1XP_063119117.1  focal adhesion kinase 1 isoform X5

    UniProtKB/TrEMBL
    A0A8I6A8P2
  6. XM_063263048.1XP_063119118.1  focal adhesion kinase 1 isoform X5

    UniProtKB/TrEMBL
    A0A8I6A8P2
  7. XM_063263049.1XP_063119119.1  focal adhesion kinase 1 isoform X5

    UniProtKB/TrEMBL
    A0A8I6A8P2
  8. XM_063263052.1XP_063119122.1  focal adhesion kinase 1 isoform X8

    UniProtKB/TrEMBL
    A0A8I6AH25
  9. XM_063263054.1XP_063119124.1  focal adhesion kinase 1 isoform X9

  10. XM_063263046.1XP_063119116.1  focal adhesion kinase 1 isoform X5

    UniProtKB/TrEMBL
    A0A8I6A8P2
  11. XM_063263044.1XP_063119114.1  focal adhesion kinase 1 isoform X1

  12. XM_039078480.2XP_038934408.1  focal adhesion kinase 1 isoform X4

    UniProtKB/TrEMBL
    A0A8I6A3T3
    Conserved Domains (5) summary
    cd05056
    Location:465734
    PTKc_FAK; Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase
    smart00295
    Location:80302
    B41; Band 4.1 homologues
    cd13190
    Location:298408
    FERM_C_FAK1; FERM domain C-lobe of Focal Adhesion Kinase 1 and 2
    pfam03623
    Location:9661095
    Focal_AT; Focal adhesion targeting region
    pfam18038
    Location:79174
    FERM_N_2; FERM N-terminal domain
  13. XM_039078477.2XP_038934405.1  focal adhesion kinase 1 isoform X3

    UniProtKB/TrEMBL
    A0A8I6A3T3
    Conserved Domains (5) summary
    cd05056
    Location:472741
    PTKc_FAK; Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase
    smart00295
    Location:80302
    B41; Band 4.1 homologues
    cd13190
    Location:298408
    FERM_C_FAK1; FERM domain C-lobe of Focal Adhesion Kinase 1 and 2
    pfam03623
    Location:9731102
    Focal_AT; Focal adhesion targeting region
    pfam18038
    Location:79174
    FERM_N_2; FERM N-terminal domain
  14. XM_039078475.2XP_038934403.1  focal adhesion kinase 1 isoform X2

    UniProtKB/TrEMBL
    A0A8I6A3T3
    Conserved Domains (5) summary
    cd05056
    Location:493762
    PTKc_FAK; Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase
    smart00295
    Location:80302
    B41; Band 4.1 homologues
    cd13190
    Location:298408
    FERM_C_FAK1; FERM domain C-lobe of Focal Adhesion Kinase 1 and 2
    pfam03623
    Location:9941123
    Focal_AT; Focal adhesion targeting region
    pfam18038
    Location:79174
    FERM_N_2; FERM N-terminal domain
  15. XM_063263057.1XP_063119127.1  focal adhesion kinase 1 isoform X12

  16. XM_063263058.1XP_063119128.1  focal adhesion kinase 1 isoform X13

  17. XM_063263059.1XP_063119129.1  focal adhesion kinase 1 isoform X13

  18. XM_063263055.1XP_063119125.1  focal adhesion kinase 1 isoform X10

  19. XM_063263056.1XP_063119126.1  focal adhesion kinase 1 isoform X11

RNA

  1. XR_010052943.1 RNA Sequence

  2. XR_005486550.2 RNA Sequence