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Camk2d calcium/calmodulin-dependent protein kinase II delta [ Rattus norvegicus (Norway rat) ]

Gene ID: 24246, updated on 3-Apr-2024

Summary

Official Symbol
Camk2dprovided by RGD
Official Full Name
calcium/calmodulin-dependent protein kinase II deltaprovided by RGD
Primary source
RGD:2263
See related
Ensembl:ENSRNOG00000011589 AllianceGenome:RGD:2263
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
CAMK1; Camk2; Camki; RATCAMKI
Summary
Enables calmodulin-dependent protein kinase activity; nitric-oxide synthase binding activity; and transmembrane transporter binding activity. Involved in several processes, including positive regulation of intracellular signal transduction; protein phosphorylation; and regulation of calcium ion transmembrane transport. Located in cytosol; nucleus; and perinuclear region of cytoplasm. Part of protein-containing complex. Used to study epilepsy. Orthologous to human CAMK2D (calcium/calmodulin dependent protein kinase II delta). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Heart (RPKM 281.6), Brain (RPKM 235.3) and 9 other tissues See more
Orthologs
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Genomic context

Location:
2q42
Exon count:
24
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 2 NC_086020.1 (217698324..217961898)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 2 NC_051337.1 (215023785..215287351)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (230900907..231132207)

Chromosome 2 - NC_086020.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134478885 Neighboring gene histidine triad nucleotide binding protein 1, pseudogene 2 Neighboring gene small nucleolar RNA SNORA17 Neighboring gene ankyrin 2 Neighboring gene uncharacterized LOC120101096

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Clone Names

  • MGC124639

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 
enables calmodulin binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables calmodulin binding IEA
Inferred from Electronic Annotation
more info
 
enables calmodulin binding ISO
Inferred from Sequence Orthology
more info
 
enables calmodulin-dependent protein kinase activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables calmodulin-dependent protein kinase activity IDA
Inferred from Direct Assay
more info
PubMed 
enables calmodulin-dependent protein kinase activity IEA
Inferred from Electronic Annotation
more info
 
enables calmodulin-dependent protein kinase activity ISO
Inferred from Sequence Orthology
more info
 
enables identical protein binding ISO
Inferred from Sequence Orthology
more info
 
enables nitric-oxide synthase binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables protein homodimerization activity ISO
Inferred from Sequence Orthology
more info
 
enables protein kinase activity IMP
Inferred from Mutant Phenotype
more info
PubMed 
enables protein serine kinase activity IEA
Inferred from Electronic Annotation
more info
 
enables protein serine/threonine kinase activity ISO
Inferred from Sequence Orthology
more info
 
enables sodium channel inhibitor activity ISO
Inferred from Sequence Orthology
more info
 
enables titin binding ISO
Inferred from Sequence Orthology
more info
 
enables transmembrane transporter binding IDA
Inferred from Direct Assay
more info
PubMed 
enables transmembrane transporter binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables transmembrane transporter binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within G1/S transition of mitotic cell cycle ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within calcium ion transport ISO
Inferred from Sequence Orthology
more info
 
involved_in cardiac muscle cell contraction IDA
Inferred from Direct Assay
more info
PubMed 
acts_upstream_of_or_within cardiac muscle contraction ISO
Inferred from Sequence Orthology
more info
 
involved_in cell growth involved in cardiac muscle cell development IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in endoplasmic reticulum calcium ion homeostasis IDA
Inferred from Direct Assay
more info
PubMed 
involved_in intracellular potassium ion homeostasis IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in negative regulation of sodium ion transmembrane transport ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of DNA biosynthetic process IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of ERK1 and ERK2 cascade IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of G2/M transition of mitotic cell cycle IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of Rac protein signal transduction IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of cardiac muscle cell apoptotic process IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of cardiac muscle hypertrophy ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of cardiac muscle hypertrophy ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in positive regulation of smooth muscle cell migration IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of vascular associated smooth muscle cell proliferation IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in regulation of calcium ion transmembrane transport via high voltage-gated calcium channel IDA
Inferred from Direct Assay
more info
PubMed 
involved_in regulation of cardiac muscle cell action potential IDA
Inferred from Direct Assay
more info
PubMed 
involved_in regulation of cardiac muscle cell action potential involved in regulation of contraction IC
Inferred by Curator
more info
PubMed 
involved_in regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion IC
Inferred by Curator
more info
PubMed 
involved_in regulation of cell communication by electrical coupling IDA
Inferred from Direct Assay
more info
PubMed 
involved_in regulation of cell communication by electrical coupling involved in cardiac conduction IC
Inferred by Curator
more info
PubMed 
involved_in regulation of cellular localization ISO
Inferred from Sequence Orthology
more info
 
involved_in regulation of cellular localization ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in regulation of membrane depolarization ISO
Inferred from Sequence Orthology
more info
 
involved_in regulation of protein localization to plasma membrane IGI
Inferred from Genetic Interaction
more info
PubMed 
involved_in regulation of relaxation of cardiac muscle IDA
Inferred from Direct Assay
more info
PubMed 
involved_in regulation of relaxation of cardiac muscle ISO
Inferred from Sequence Orthology
more info
 
involved_in regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum IDA
Inferred from Direct Assay
more info
PubMed 
acts_upstream_of_or_within regulation of sodium ion transport ISO
Inferred from Sequence Orthology
more info
 
involved_in relaxation of cardiac muscle IDA
Inferred from Direct Assay
more info
PubMed 
involved_in response to hypoxia IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
located_in T-tubule ISO
Inferred from Sequence Orthology
more info
 
located_in axon initial segment ISO
Inferred from Sequence Orthology
more info
 
part_of calcium- and calmodulin-dependent protein kinase complex ISO
Inferred from Sequence Orthology
more info
 
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
located_in cytoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in intercalated disc ISO
Inferred from Sequence Orthology
more info
 
located_in neuromuscular junction ISO
Inferred from Sequence Orthology
more info
 
is_active_in neuron projection IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in neuronal cell body ISO
Inferred from Sequence Orthology
more info
 
located_in nucleus IDA
Inferred from Direct Assay
more info
PubMed 
located_in nucleus ISO
Inferred from Sequence Orthology
more info
 
located_in organelle IEA
Inferred from Electronic Annotation
more info
 
located_in perinuclear region of cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
part_of protein-containing complex IDA
Inferred from Direct Assay
more info
PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 
located_in sarcoplasmic reticulum ISO
Inferred from Sequence Orthology
more info
 
located_in sarcoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
calcium/calmodulin-dependent protein kinase type II subunit delta
Names
Ca++/calmodulin-dependent protein kinase 2 delta subunit
Ca++/calmodulin-dependent protein kinase II, delta subunit
caM kinase II subunit delta
caM-kinase II delta chain
caMK-II subunit delta
calcium/calmodulin-dependent protein kinase (CaM kinase) II delta
calcium/calmodulin-dependent protein kinase type II delta chain
NP_036651.1
XP_006233347.2
XP_008759674.1
XP_017446093.1
XP_017446094.1
XP_017446096.1
XP_017446097.1
XP_017446099.1
XP_017446101.1
XP_017446102.1
XP_017446103.1
XP_017446105.1
XP_017446107.1
XP_038957614.1
XP_038957616.1
XP_038957617.1
XP_038957618.1
XP_038957621.1
XP_038957622.1
XP_038957624.1
XP_038957631.1
XP_038957632.1
XP_063137349.1
XP_063137351.1
XP_063137352.1
XP_063137353.1
XP_063137354.1
XP_063137355.1

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_012519.2NP_036651.1  calcium/calmodulin-dependent protein kinase type II subunit delta

    See identical proteins and their annotated locations for NP_036651.1

    Status: PROVISIONAL

    Source sequence(s)
    J05072
    UniProtKB/Swiss-Prot
    P15791, P97915, P97916, Q3B7L0, Q63904, Q63905, Q63906, Q63907, Q63908
    UniProtKB/TrEMBL
    A0A8L2QW89, A6HVK9
    Related
    ENSRNOP00000016026.6, ENSRNOT00000016026.9
    Conserved Domains (3) summary
    smart00220
    Location:14272
    S_TKc; Serine/Threonine protein kinases, catalytic domain
    cd14086
    Location:12303
    STKc_CaMKII; Catalytic domain of the Serine/Threonine kinase, Calcium/calmodulin-dependent protein kinase Type II
    pfam08332
    Location:380507
    CaMKII_AD; Calcium/calmodulin dependent protein kinase II association domain

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086020.1 Reference GRCr8

    Range
    217698324..217961898
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006233285.5XP_006233347.2  calcium/calmodulin-dependent protein kinase type II subunit delta isoform X14

    UniProtKB/TrEMBL
    A0A8I6A1N4
    Conserved Domains (2) summary
    cd14086
    Location:12303
    STKc_CaMKII; Catalytic domain of the Serine/Threonine kinase, Calcium/calmodulin-dependent protein kinase Type II
    pfam08332
    Location:357484
    CaMKII_AD; Calcium/calmodulin dependent protein kinase II association domain
  2. XM_017590604.3XP_017446093.1  calcium/calmodulin-dependent protein kinase type II subunit delta isoform X2

    UniProtKB/Swiss-Prot
    P15791, P97915, P97916, Q3B7L0, Q63904, Q63905, Q63906, Q63907, Q63908
    UniProtKB/TrEMBL
    A0A8L2QW89, A6HVK9
    Conserved Domains (3) summary
    smart00220
    Location:14272
    S_TKc; Serine/Threonine protein kinases, catalytic domain
    cd14086
    Location:12303
    STKc_CaMKII; Catalytic domain of the Serine/Threonine kinase, Calcium/calmodulin-dependent protein kinase Type II
    pfam08332
    Location:380507
    CaMKII_AD; Calcium/calmodulin dependent protein kinase II association domain
  3. XM_017590613.3XP_017446102.1  calcium/calmodulin-dependent protein kinase type II subunit delta isoform X10

    UniProtKB/TrEMBL
    A0A8I6AT87
    Related
    ENSRNOP00000095840.1
  4. XM_017590610.3XP_017446099.1  calcium/calmodulin-dependent protein kinase type II subunit delta isoform X6

    UniProtKB/TrEMBL
    A0A8I6AT87
  5. XM_039101696.2XP_038957624.1  calcium/calmodulin-dependent protein kinase type II subunit delta isoform X19

    UniProtKB/TrEMBL
    A0A8I6AT87
    Related
    ENSRNOP00000097734.1
    Conserved Domains (2) summary
    cd14086
    Location:12303
    STKc_CaMKII; Catalytic domain of the Serine/Threonine kinase, Calcium/calmodulin-dependent protein kinase Type II
    pfam08332
    Location:366493
    CaMKII_AD; Calcium/calmodulin dependent protein kinase II association domain
  6. XM_017590612.3XP_017446101.1  calcium/calmodulin-dependent protein kinase type II subunit delta isoform X8

    UniProtKB/TrEMBL
    A0A8I6AL07
    Conserved Domains (2) summary
    cd14086
    Location:12303
    STKc_CaMKII; Catalytic domain of the Serine/Threonine kinase, Calcium/calmodulin-dependent protein kinase Type II
    pfam08332
    Location:360487
    CaMKII_AD; Calcium/calmodulin dependent protein kinase II association domain
  7. XM_063281282.1XP_063137352.1  calcium/calmodulin-dependent protein kinase type II subunit delta isoform X17

  8. XM_039101703.2XP_038957631.1  calcium/calmodulin-dependent protein kinase type II subunit delta isoform X23

    UniProtKB/TrEMBL
    A0A8I6A1N4, A6HVK8
    Related
    ENSRNOP00000015559.7
    Conserved Domains (2) summary
    cd14086
    Location:12303
    STKc_CaMKII; Catalytic domain of the Serine/Threonine kinase, Calcium/calmodulin-dependent protein kinase Type II
    pfam08332
    Location:346473
    CaMKII_AD; Calcium/calmodulin dependent protein kinase II association domain
  9. XM_017590616.3XP_017446105.1  calcium/calmodulin-dependent protein kinase type II subunit delta isoform X16

    UniProtKB/TrEMBL
    A0A8I6A1N4
  10. XM_017590607.3XP_017446096.1  calcium/calmodulin-dependent protein kinase type II subunit delta isoform X3

    UniProtKB/TrEMBL
    A0A8L2QW89
  11. XM_039101686.2XP_038957614.1  calcium/calmodulin-dependent protein kinase type II subunit delta isoform X7

    UniProtKB/TrEMBL
    A0A8I6AT87
    Conserved Domains (2) summary
    cd14086
    Location:12303
    STKc_CaMKII; Catalytic domain of the Serine/Threonine kinase, Calcium/calmodulin-dependent protein kinase Type II
    pfam08332
    Location:365492
    CaMKII_AD; Calcium/calmodulin dependent protein kinase II association domain
  12. XM_039101689.2XP_038957617.1  calcium/calmodulin-dependent protein kinase type II subunit delta isoform X12

    UniProtKB/TrEMBL
    A0A8I6AL07
    Conserved Domains (2) summary
    cd14086
    Location:12303
    STKc_CaMKII; Catalytic domain of the Serine/Threonine kinase, Calcium/calmodulin-dependent protein kinase Type II
    pfam08332
    Location:359486
    CaMKII_AD; Calcium/calmodulin dependent protein kinase II association domain
  13. XM_017590618.3XP_017446107.1  calcium/calmodulin-dependent protein kinase type II subunit delta isoform X20

    UniProtKB/TrEMBL
    A0A8I6A1N4
    Conserved Domains (2) summary
    cd14086
    Location:12303
    STKc_CaMKII; Catalytic domain of the Serine/Threonine kinase, Calcium/calmodulin-dependent protein kinase Type II
    pfam08332
    Location:345472
    CaMKII_AD; Calcium/calmodulin dependent protein kinase II association domain
  14. XM_039101704.2XP_038957632.1  calcium/calmodulin-dependent protein kinase type II subunit delta isoform X24

    UniProtKB/TrEMBL
    A0A8I6A1N4
    Conserved Domains (2) summary
    cd14086
    Location:12303
    STKc_CaMKII; Catalytic domain of the Serine/Threonine kinase, Calcium/calmodulin-dependent protein kinase Type II
    pfam08332
    Location:345472
    CaMKII_AD; Calcium/calmodulin dependent protein kinase II association domain
  15. XM_017590614.3XP_017446103.1  calcium/calmodulin-dependent protein kinase type II subunit delta isoform X15

    UniProtKB/TrEMBL
    A0A8I6A1N4
  16. XM_008761452.3XP_008759674.1  calcium/calmodulin-dependent protein kinase type II subunit delta isoform X1

    UniProtKB/TrEMBL
    A0A8L2QW89
    Related
    ENSRNOP00000085967.1
    Conserved Domains (3) summary
    smart00220
    Location:14272
    S_TKc; Serine/Threonine protein kinases, catalytic domain
    cd14086
    Location:12303
    STKc_CaMKII; Catalytic domain of the Serine/Threonine kinase, Calcium/calmodulin-dependent protein kinase Type II
    pfam08332
    Location:380507
    CaMKII_AD; Calcium/calmodulin dependent protein kinase II association domain
  17. XM_063281281.1XP_063137351.1  calcium/calmodulin-dependent protein kinase type II subunit delta isoform X11

    UniProtKB/TrEMBL
    A0A8I6A550
  18. XM_063281279.1XP_063137349.1  calcium/calmodulin-dependent protein kinase type II subunit delta isoform X5

  19. XM_063281283.1XP_063137353.1  calcium/calmodulin-dependent protein kinase type II subunit delta isoform X21

  20. XM_039101688.2XP_038957616.1  calcium/calmodulin-dependent protein kinase type II subunit delta isoform X9

    UniProtKB/TrEMBL
    A0A8I6AL07
    Conserved Domains (2) summary
    cd14086
    Location:12303
    STKc_CaMKII; Catalytic domain of the Serine/Threonine kinase, Calcium/calmodulin-dependent protein kinase Type II
    pfam08332
    Location:360487
    CaMKII_AD; Calcium/calmodulin dependent protein kinase II association domain
  21. XM_039101694.2XP_038957622.1  calcium/calmodulin-dependent protein kinase type II subunit delta isoform X18

    UniProtKB/TrEMBL
    A0A8I6A1N4
    Conserved Domains (2) summary
    cd14086
    Location:12303
    STKc_CaMKII; Catalytic domain of the Serine/Threonine kinase, Calcium/calmodulin-dependent protein kinase Type II
    pfam08332
    Location:346473
    CaMKII_AD; Calcium/calmodulin dependent protein kinase II association domain
  22. XM_017590608.3XP_017446097.1  calcium/calmodulin-dependent protein kinase type II subunit delta isoform X4

    UniProtKB/TrEMBL
    A0A8L2QW89
  23. XM_039101690.2XP_038957618.1  calcium/calmodulin-dependent protein kinase type II subunit delta isoform X13

    UniProtKB/TrEMBL
    A0A8I6AL07
    Conserved Domains (2) summary
    cd14086
    Location:12303
    STKc_CaMKII; Catalytic domain of the Serine/Threonine kinase, Calcium/calmodulin-dependent protein kinase Type II
    pfam08332
    Location:359486
    CaMKII_AD; Calcium/calmodulin dependent protein kinase II association domain
  24. XM_063281284.1XP_063137354.1  calcium/calmodulin-dependent protein kinase type II subunit delta isoform X22

  25. XM_017590605.3XP_017446094.1  calcium/calmodulin-dependent protein kinase type II subunit delta isoform X2

    UniProtKB/Swiss-Prot
    P15791, P97915, P97916, Q3B7L0, Q63904, Q63905, Q63906, Q63907, Q63908
    UniProtKB/TrEMBL
    A0A8L2QW89, A6HVK9
    Conserved Domains (3) summary
    smart00220
    Location:14272
    S_TKc; Serine/Threonine protein kinases, catalytic domain
    cd14086
    Location:12303
    STKc_CaMKII; Catalytic domain of the Serine/Threonine kinase, Calcium/calmodulin-dependent protein kinase Type II
    pfam08332
    Location:380507
    CaMKII_AD; Calcium/calmodulin dependent protein kinase II association domain
  26. XM_039101693.2XP_038957621.1  calcium/calmodulin-dependent protein kinase type II subunit delta isoform X17

    UniProtKB/TrEMBL
    A0A8I6A1N4
    Conserved Domains (2) summary
    cd14086
    Location:12303
    STKc_CaMKII; Catalytic domain of the Serine/Threonine kinase, Calcium/calmodulin-dependent protein kinase Type II
    pfam08332
    Location:346473
    CaMKII_AD; Calcium/calmodulin dependent protein kinase II association domain
  27. XM_063281285.1XP_063137355.1  calcium/calmodulin-dependent protein kinase type II subunit delta isoform X25