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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001082552.2 → NP_001076021.1 E3 ubiquitin-protein ligase TRIM21
See identical proteins and their annotated locations for NP_001076021.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) lacks an exon in the 5' non-coding region, hence, has a shorter 5' UTR compared to variant 1. Variants 1 and 2 encode the same protein.
- Source sequence(s)
-
AK150484, AK152619, BB681113, CJ051157
- Consensus CDS
-
CCDS40051.1
- UniProtKB/TrEMBL
- Q3U7K7, Q3UCL2
- Related
- ENSMUSP00000102526.2, ENSMUST00000106913.3
- Conserved Domains (4) summary
-
- cd00021
Location:86 → 124
- BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
- cd00162
Location:11 → 54
- RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
- pfam13094
Location:181 → 265
- CENP-Q; CENP-Q, a CENPA-CAD centromere complex subunit
- cd12900
Location:283 → 460
- SPRY_PRY_TRIM21; PRY/SPRY domain in tripartite motif-binding protein 21 (TRIM21) also known as 52kD Ribonucleoprotein Autoantigen (Ro52)
-
NM_009277.4 → NP_033303.3 E3 ubiquitin-protein ligase TRIM21
See identical proteins and their annotated locations for NP_033303.3
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the longer transcript. Variants 1 and 2 encode the same protein.
- Source sequence(s)
-
AK171489, BB681113, CJ051157
- Consensus CDS
-
CCDS40051.1
- UniProtKB/TrEMBL
- Q3U7K7, Q3UCL2
- Related
- ENSMUSP00000033264.5, ENSMUST00000033264.12
- Conserved Domains (4) summary
-
- cd00021
Location:86 → 124
- BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
- cd00162
Location:11 → 54
- RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
- pfam13094
Location:181 → 265
- CENP-Q; CENP-Q, a CENPA-CAD centromere complex subunit
- cd12900
Location:283 → 460
- SPRY_PRY_TRIM21; PRY/SPRY domain in tripartite motif-binding protein 21 (TRIM21) also known as 52kD Ribonucleoprotein Autoantigen (Ro52)
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000073.7 Reference GRCm39 C57BL/6J
- Range
-
102207127..102214689 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)