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Rnu1a1 U1a1 small nuclear RNA [ Mus musculus (house mouse) ]

Gene ID: 19842, updated on 8-Feb-2024

Summary

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Official Symbol
Rnu1a1provided by MGI
Official Full Name
U1a1 small nuclear RNAprovided by MGI
Primary source
MGI:MGI:97972
See related
Ensembl:ENSMUSG00000119476 AllianceGenome:MGI:97972
Gene type
snRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Rnu1a-1
Summary
Located in nucleus. Is expressed in testis. [provided by Alliance of Genome Resources, Apr 2022]
Annotation information
Note: GeneID 19842 was originally defined by sequence and annotation (small nuclear RNA U1a1) of M32269.1, which contains a deletion compared to chromosome 11 genomic sequence and was incorrectly annotated on chromosome 1 on NCBI's Build 37.2. This locus is now defined by sequence and annotation (small nuclear RNA U1a1) of M14121.1 on chromosome 11. [17 Jun 2014]
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Genomic context

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Location:
11 C; 11
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (87313693..87313856)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (87422867..87423030)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene protein phosphatase 1E (PP2C domain containing) Neighboring gene predicted gene, 33937 Neighboring gene predicted gene, 22883 Neighboring gene RAD51 paralog C Neighboring gene STARR-positive B cell enhancer ABC_E3005 Neighboring gene VISTA enhancer mm264 Neighboring gene STARR-positive B cell enhancer mm9_chr11:87239792-87240093 Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:87240340-87240523 Neighboring gene testis expressed gene 14 intercellular bridge forming factor Neighboring gene STARR-positive B cell enhancer ABC_E3990 Neighboring gene predicted gene, 22068 Neighboring gene small nucleolar RNA, C/D box 3B1 Neighboring gene predicted gene, 57580

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Localization of human U1 small nuclear RNA genes to band p36.3 of chromosome 1 by in situ hybridization. Naylor SL, et al. Somat Cell Mol Genet, 1984 May. PMID 6202011
  2. Control of mouse U1 snRNA gene expression during in vitro differentiation of mouse embryonic stem cells. Cheng Y, et al. Nucleic Acids Res, 1997 Jun 1. PMID 9153321, Free PMC Article
  3. Differential control of U1 small nuclear RNA expression during mouse development. Lund E, et al. Science, 1985 Sep 20. PMID 2412294
  4. mgl-1, a mouse homologue of the Drosophila tumor-suppressor gene l(2)gl, maps to chromosome 11. Kuwabara K, et al. Genomics, 1994 Mar 15. PMID 8020994
  5. Functional, developmentally expressed genes for mouse U1a and U1b snRNAs contain both conserved and non-conserved transcription signals. Howard EF, et al. Nucleic Acids Res, 1986 Dec 22. PMID 3027665, Free PMC Article

See all (15) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Gene Ontology Provided by MGI

Component Evidence Code Pubs
located_in nucleus EXP
Inferred from Experiment
more info
 PubMed 
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_004411.3 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL669902
    Related
    ENSMUST00000240501.1

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    87313693..87313856
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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