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Ptgdr prostaglandin D receptor [ Mus musculus (house mouse) ]

Gene ID: 19214, updated on 5-Mar-2024

Summary

Official Symbol
Ptgdrprovided by MGI
Official Full Name
prostaglandin D receptorprovided by MGI
Primary source
MGI:MGI:102966
See related
Ensembl:ENSMUSG00000071489 AllianceGenome:MGI:102966
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
DP; PGD
Summary
Enables prostaglandin D receptor activity and prostaglandin J receptor activity. Acts upstream of or within several processes, including adenosine metabolic process; cellular response to prostaglandin D stimulus; and male sex determination. Located in plasma membrane. Is expressed in several structures, including alimentary system; brain; hemolymphoid system gland; reproductive system; and respiratory system. Human ortholog(s) of this gene implicated in asthma. Orthologous to human PTGDR (prostaglandin D2 receptor). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in testis adult (RPKM 1.2), CNS E18 (RPKM 0.5) and 14 other tissues See more
Orthologs
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Genomic context

Location:
14 C1; 14 22.59 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (45088692..45096832, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (44851235..44859375, complement)

Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 34060 Neighboring gene predicted gene, 41141 Neighboring gene crumbs homolog 1 pseudogene Neighboring gene STARR-seq mESC enhancer starr_36527 Neighboring gene STARR-seq mESC enhancer starr_36528 Neighboring gene STARR-seq mESC enhancer starr_36529 Neighboring gene predicted gene, 34198 Neighboring gene STARR-seq mESC enhancer starr_36530 Neighboring gene predicted gene, 16976 Neighboring gene crumbs homolog 1 pseudogene Neighboring gene STARR-seq mESC enhancer starr_36531 Neighboring gene STARR-seq mESC enhancer starr_36532 Neighboring gene predicted gene, 41142 Neighboring gene microRNA 327

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (7)  1 citation
  • Endonuclease-mediated (1) 

Pathways from PubChem

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables G protein-coupled receptor activity IEA
Inferred from Electronic Annotation
more info
 
enables prostaglandin D receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables prostaglandin D receptor activity IDA
Inferred from Direct Assay
more info
PubMed 
enables prostaglandin D receptor activity ISO
Inferred from Sequence Orthology
more info
 
enables prostaglandin J receptor activity IDA
Inferred from Direct Assay
more info
PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 
located_in plasma membrane ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
prostaglandin D2 receptor
Names
PGD receptor
PGD2 receptor
prostanoid DP receptor

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_008962.4NP_032988.3  prostaglandin D2 receptor

    See identical proteins and their annotated locations for NP_032988.3

    Status: VALIDATED

    Source sequence(s)
    AK032488, BC132297
    Consensus CDS
    CCDS26971.1
    UniProtKB/Swiss-Prot
    A2RSY4, P70263, Q8CCM3
    Related
    ENSMUSP00000093653.2, ENSMUST00000095959.2
    Conserved Domains (1) summary
    pfam00001
    Location:58318
    7tm_1; 7 transmembrane receptor (rhodopsin family)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000080.7 Reference GRCm39 C57BL/6J

    Range
    45088692..45096832 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)