U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

rpl-11.1 60S ribosomal protein L11-1;Large ribosomal subunit protein uL5A [ Caenorhabditis elegans ]

Gene ID: 178778, updated on 5-May-2024

Summary

Go to the top of the page Help
Gene symbol
rpl-11.1
Gene description
60S ribosomal protein L11-1;Large ribosomal subunit protein uL5A
Primary source
WormBase:WBGene00004422
Locus tag
CELE_T22F3.4
See related
AllianceGenome:WB:WBGene00004422
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in cytoplasm; nucleus; and ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in germ line. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 7 and T-cell acute lymphoblastic leukemia. Orthologous to human RPL11 (ribosomal protein L11). [provided by Alliance of Genome Resources, Apr 2022]
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: V
Exon count:
3
Sequence:
Chromosome: V; NC_003283.11 (3585312..3586064, complement)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Alpha-1,4 glucan phosphorylase Neighboring gene tRNA-Pro Neighboring gene tRNA-Pro Neighboring gene USP domain-containing protein Neighboring gene tRNA-Pro Neighboring gene tRNA-Pro

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Lipidomic alteration and stress-defense mechanism of soil nematode Caenorhabditis elegans in response to extremely low-frequency electromagnetic field exposure. Sun Y, et al. Ecotoxicol Environ Saf, 2019 Apr 15. PMID 30579161
  2. Deficiency of cardiolipin synthase causes abnormal mitochondrial function and morphology in germ cells of Caenorhabditis elegans. Sakamoto T, et al. J Biol Chem, 2012 Feb 10. PMID 22174409, Free PMC Article
  3. Autosomal genes of autosomal/X-linked duplicated gene pairs and germ-line proliferation in Caenorhabditis elegans. Maciejowski J, et al. Genetics, 2005 Apr. PMID 15687263, Free PMC Article
  4. RNAi analysis of genes expressed in the ovary of Caenorhabditis elegans. Piano F, et al. Curr Biol, 2000 Dec 14-28. PMID 11137018
  5. A Sterile 20 Family Kinase and Its Co-factor CCM-3 Regulate Contractile Ring Proteins on Germline Intercellular Bridges. Rehain-Bell K, et al. Curr Biol, 2017 Mar 20. PMID 28285996, Free PMC Article

See all (20) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

Go to the top of the page

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables rRNA binding IEA
Inferred from Electronic Annotation
more info
  
enables structural constituent of ribosome IBA
Inferred from Biological aspect of Ancestor
more info
  
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in translation IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in translation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
part_of cytosolic large ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
  
located_in ribosome IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
60S ribosomal protein L11-1;Large ribosomal subunit protein uL5A
NP_001309658.1
  • Confirmed by transcript evidence
NP_504008.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    3585312..3586064 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_071607.7 → NP_504008.1  Large ribosomal subunit protein uL5A [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_504008.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q94300
    Conserved Domains (3) summary
    PTZ00156
    Location:12 → 182
    PTZ00156; 60S ribosomal protein L11; Provisional
    pfam00281
    Location:23 → 70
    Ribosomal_L5; Ribosomal protein L5
    pfam00673
    Location:75 → 144
    Ribosomal_L5_C; ribosomal L5P family C-terminus

  2. NM_001322540.3 → NP_001309658.1  60S ribosomal protein L11-1 [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A131MBQ6
    Conserved Domains (1) summary
    PTZ00156
    Location:1 → 48
    PTZ00156; 60S ribosomal protein L11; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q94300.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Chemical Information
Molecular Biology Databases
Research Materials
Tools
Miscellaneous