rps-18 Small ribosomal subunit protein uS13 [Caenorhabditis elegans] - Gene

Summary

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Gene symbol: rps-18
Gene description: Small ribosomal subunit protein uS13
Primary source: WormBase:WBGene00004487
Locus tag: CELE_Y57G11C.16
See related: AllianceGenome:WB:WBGene00004487
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Caenorhabditis elegans (strain: Bristol N2)
Lineage: Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary: Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in ribosome. Predicted to be part of small ribosomal subunit. Predicted to be active in cytosol. Orthologous to human RPS18 (ribosomal protein S18). [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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Location:: chromosome: IV

Exon count:: 3

Sequence:: Chromosome: IV; NC_003282.8 (14825679..14826477)

Chromosome IV - NC_003282.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003282.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Pathways from PubChem

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

Y57G11C.16 (e-PCR)
- UniSTS:321095

Homology

Orthologs from OrthoDB

Gene Ontology Provided by WormBase

Function	Evidence Code	Pubs
enables RNA binding	IEA Inferred from Electronic Annotation more info
enables nucleic acid binding	IEA Inferred from Electronic Annotation more info
enables structural constituent of ribosome	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in translation	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
is_active_in cytosol	IBA Inferred from Biological aspect of Ancestor more info
part_of ribonucleoprotein complex	IEA Inferred from Electronic Annotation more info
located_in ribosome	IEA Inferred from Electronic Annotation more info
part_of small ribosomal subunit	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: Small ribosomal subunit protein uS13

NP_502794.1

Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003282.8 Reference assembly

Range

14825679..14826477

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_070393.5 → NP_502794.1 Small ribosomal subunit protein uS13 [Caenorhabditis elegans]

See identical proteins and their annotated locations for NP_502794.1

Status: REVIEWED

UniProtKB/TrEMBL

O18240

Conserved Domains (2) summary

PTZ00134
Location:1 → 152

PTZ00134; 40S ribosomal protein S18; Provisional

COG0099
Location:14 → 152

RpsM; Ribosomal protein S13 [Translation, ribosomal structure and biogenesis]