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rps-4 Small ribosomal subunit protein eS4 [ Caenorhabditis elegans ]

Gene ID: 177481, updated on 5-May-2024

Summary

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Gene symbol
rps-4
Gene description
Small ribosomal subunit protein eS4
Primary source
WormBase:WBGene00004473
Locus tag
CELE_Y43B11AR.4
See related
AllianceGenome:WB:WBGene00004473
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Is expressed in several structures, including hypodermis; intestine; nervous system; pharynx; and reproductive system. Orthologous to several human genes including RPS4X (ribosomal protein S4 X-linked). [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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Location:
chromosome: IV
Exon count:
3
Sequence:
Chromosome: IV; NC_003282.8 (7083696..7084682, complement)

Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene MS Related Protein Neighboring gene TruB_N domain-containing protein Neighboring gene ncRNA Neighboring gene Vinculin Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003282.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Asymmetric Arginine Dimethylation Modulates Mitochondrial Energy Metabolism and Homeostasis in Caenorhabditis elegans. Sha L, et al. Mol Cell Biol, 2017 Mar 15. PMID 27994012, Free PMC Article
  2. SUMOylation of the small GTPase ARL-13 promotes ciliary targeting of sensory receptors. Li Y, et al. J Cell Biol, 2012 Nov 12. PMID 23128241, Free PMC Article
  3. C. elegans STI-1, the homolog of Sti1/Hop, is involved in aging and stress response. Song HO, et al. J Mol Biol, 2009 Jul 24. PMID 19467242
  4. High-throughput in vivo analysis of gene expression in Caenorhabditis elegans. Hunt-Newbury R, et al. PLoS Biol, 2007 Sep. PMID 17850180, Free PMC Article
  5. Caenorhabditis elegans operons: form and function. Blumenthal T, et al. Nat Rev Genet, 2003 Feb. PMID 12560808

See all (16) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables rRNA binding IEA
Inferred from Electronic Annotation
more info
  
enables structural constituent of ribosome IBA
Inferred from Biological aspect of Ancestor
more info
  
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in translation IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in translation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of cytosolic small ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
  
located_in ribosome IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Small ribosomal subunit protein eS4
NP_501103.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003282.8 Reference assembly

    Range
    7083696..7084682 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_068702.8 → NP_501103.1  Small ribosomal subunit protein eS4 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_501103.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9N3X2
    Conserved Domains (5) summary
    PLN00036
    Location:2 → 256
    PLN00036; 40S ribosomal protein S4; Provisional
    cd06087
    Location:174 → 228
    KOW_RPS4; KOW motif of Ribosomal Protein S4 (RPS4)
    pfam00900
    Location:94 → 168
    Ribosomal_S4e; Ribosomal family S4e
    pfam08071
    Location:2 → 38
    RS4NT; RS4NT (NUC023) domain
    pfam16121
    Location:211 → 258
    40S_S4_C; 40S ribosomal protein S4 C-terminus
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9N3X2.1

Gene LinkOut

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