rpb-11 putative DNA-directed RNA polymerase II subunit RPB11 [Caenorhabditis elegans] - Gene

Summary

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Gene symbol: rpb-11
Gene description: putative DNA-directed RNA polymerase II subunit RPB11
Primary source: WormBase:WBGene00012187
Locus tag: CELE_W01G7.3
See related: AllianceGenome:WB:WBGene00012187
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Caenorhabditis elegans (strain: Bristol N2)
Lineage: Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary: Predicted to enable protein dimerization activity. Predicted to contribute to DNA-directed 5'-3' RNA polymerase activity. Predicted to be involved in transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of RNA polymerase II, core complex. Orthologous to several human genes including POLR2J (RNA polymerase II subunit J). [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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Location:: chromosome: II

Exon count:: 3

Sequence:: Chromosome: II; NC_003280.10 (14060085..14060624)

Chromosome II - NC_003280.10 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003280.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

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Pathways from PubChem

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

W01G7.3 (e-PCR)
- UniSTS:317219

Homology

Orthologs from OrthoDB

Gene Ontology Provided by WormBase

Function	Evidence Code	Pubs
contributes_to RNA polymerase II activity	IBA Inferred from Biological aspect of Ancestor more info
enables protein dimerization activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in DNA-templated transcription	IEA Inferred from Electronic Annotation more info
involved_in transcription by RNA polymerase II	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
part_of DNA-directed RNA polymerase complex	IEA Inferred from Electronic Annotation more info
part_of RNA polymerase II, core complex	IBA Inferred from Biological aspect of Ancestor more info
part_of RNA polymerase II, core complex	IEA Inferred from Electronic Annotation more info
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: putative DNA-directed RNA polymerase II subunit RPB11

NP_496942.1

Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003280.10 Reference assembly

Range

14060085..14060624

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_064541.6 → NP_496942.1 putative DNA-directed RNA polymerase II subunit RPB11 [Caenorhabditis elegans]

See identical proteins and their annotated locations for NP_496942.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q9XVH6

Conserved Domains (1) summary

cd06926
Location:14 → 103

RNAP_II_RPB11; RPB11 subunit of Eukaryotic RNA polymerase II