rpl-10 Large ribosomal subunit protein uL16 [Caenorhabditis elegans] - Gene

Summary

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Gene symbol: rpl-10
Gene description: Large ribosomal subunit protein uL16
Primary source: WormBase:WBGene00004421
Locus tag: CELE_F10B5.1
See related: AllianceGenome:WB:WBGene00004421
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Caenorhabditis elegans (strain: Bristol N2)
Lineage: Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary: Predicted to be a structural constituent of ribosome. Predicted to be involved in ribosomal large subunit assembly. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in several structures, including excretory cell; hypodermis; intestine; non-striated muscle; and pharynx. Human ortholog(s) of this gene implicated in autistic disorder and syndromic X-linked mental retardation 35. Orthologous to several human genes including RPL10 (ribosomal protein L10). [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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Location:: chromosome: II

Exon count:: 3

Sequence:: Chromosome: II; NC_003280.10 (8143881..8144671)

Chromosome II - NC_003280.10 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003280.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Pathways from PubChem

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

F10B5.1 (e-PCR)
- UniSTS:315690

Homology

Orthologs from OrthoDB

Gene Ontology Provided by WormBase

Function	Evidence Code	Pubs
enables structural constituent of ribosome	IBA Inferred from Biological aspect of Ancestor more info
enables structural constituent of ribosome	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in ribosomal large subunit assembly	IBA Inferred from Biological aspect of Ancestor more info
involved_in translation	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
part_of cytosolic large ribosomal subunit	IBA Inferred from Biological aspect of Ancestor more info
part_of ribonucleoprotein complex	IEA Inferred from Electronic Annotation more info
located_in ribosome	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: Large ribosomal subunit protein uL16

NP_495707.1

Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003280.10 Reference assembly

Range

8143881..8144671

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_063306.9 → NP_495707.1 Large ribosomal subunit protein uL16 [Caenorhabditis elegans]

See identical proteins and their annotated locations for NP_495707.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q09533

Conserved Domains (1) summary

PTZ00173
Location:1 → 209

PTZ00173; 60S ribosomal protein L10; Provisional