rps-6 Small ribosomal subunit protein eS6 [Caenorhabditis elegans] - Gene

Summary

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Gene symbol: rps-6
Gene description: Small ribosomal subunit protein eS6
Primary source: WormBase:WBGene00004475
Locus tag: CELE_Y71A12B.1
See related: AllianceGenome:WB:WBGene00004475
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Caenorhabditis elegans (strain: Bristol N2)
Lineage: Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary: Predicted to be a structural constituent of ribosome. Involved in determination of adult lifespan. Predicted to be located in ribosome. Orthologous to human RPS6 (ribosomal protein S6). [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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Location:: chromosome: I

Exon count:: 3

Sequence:: Chromosome: I; NC_003279.8 (13952161..13953203)

Chromosome I - NC_003279.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003279.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Pathways from PubChem

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

Gene Ontology Provided by WormBase

Function	Evidence Code	Pubs
enables structural constituent of ribosome	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in determination of adult lifespan	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in ribosomal small subunit biogenesis	ISS Inferred from Sequence or Structural Similarity more info
involved_in translation	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
located_in nucleolus	IEA Inferred from Electronic Annotation more info
located_in nucleus	IEA Inferred from Electronic Annotation more info
part_of ribonucleoprotein complex	IEA Inferred from Electronic Annotation more info
located_in ribosome	IEA Inferred from Electronic Annotation more info
part_of small-subunit processome	ISS Inferred from Sequence or Structural Similarity more info

General protein information

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Preferred Names: Small ribosomal subunit protein eS6

NP_001263582.1

Partially confirmed by transcript evidence

NP_493435.1

Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003279.8 Reference assembly

Range

13952161..13953203

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_061034.9 → NP_493435.1 Small ribosomal subunit protein eS6 [Caenorhabditis elegans]

See identical proteins and their annotated locations for NP_493435.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q9NEN6

Conserved Domains (1) summary

cl00931
Location:1 → 219

Ribosomal_S6e; Ribosomal protein S6e
NM_001276653.3 → NP_001263582.1 Small ribosomal subunit protein eS6 [Caenorhabditis elegans]

See identical proteins and their annotated locations for NP_001263582.1

Status: REVIEWED

UniProtKB/TrEMBL

I2HAF9

Conserved Domains (1) summary

cl00931
Location:1 → 157

Ribosomal_S6e; Ribosomal protein S6e