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rps-17 Small ribosomal subunit protein eS17 [ Caenorhabditis elegans ]

Gene ID: 172313, updated on 5-May-2024

Summary

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Gene symbol
rps-17
Gene description
Small ribosomal subunit protein eS17
Primary source
WormBase:WBGene00004486
Locus tag
CELE_T08B2.10
See related
AllianceGenome:WB:WBGene00004486
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in ribosome. Is expressed in several structures, including anal depressor muscle; excretory cell; intestine; pharynx; and spermatheca. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 4. Orthologous to human RPS17 (ribosomal protein S17). [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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Location:
chromosome: I
Exon count:
3
Sequence:
Chromosome: I; NC_003279.8 (6220093..6220764, complement)

Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene phenylalanine--tRNA ligase Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene tRNA Neighboring gene Activin types I and II receptor domain-containing protein Neighboring gene RNA-binding protein 5 Neighboring gene HUN domain-containing protein Neighboring gene PINc domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003279.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Nucleolar proteins suppress Caenorhabditis elegans innate immunity by inhibiting p53/CEP-1. Fuhrman LE, et al. PLoS Genet, 2009 Sep. PMID 19763173, Free PMC Article
  2. Functional genomic analysis of C. elegans chromosome I by systematic RNA interference. Fraser AG, et al. Nature, 2000 Nov 16. PMID 11099033
  3. The nascent polypeptide-associated complex is a key regulator of proteostasis. Kirstein-Miles J, et al. EMBO J, 2013 May 15. PMID 23604074, Free PMC Article
  4. Functional characterization of C. elegans Y-box-binding proteins reveals tissue-specific functions and a critical role in the formation of polysomes. Arnold A, et al. Nucleic Acids Res, 2014 Dec 1. PMID 25378320, Free PMC Article
  5. Analysis of long-lived C. elegans daf-2 mutants using serial analysis of gene expression. Halaschek-Wiener J, et al. Genome Res, 2005 May. PMID 15837805, Free PMC Article

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
  
located_in ribosome IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Small ribosomal subunit protein eS17
NP_491795.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003279.8 Reference assembly

    Range
    6220093..6220764 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_059394.9 → NP_491795.1  Small ribosomal subunit protein eS17 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_491795.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O01692
    Conserved Domains (1) summary
    pfam00833
    Location:1 → 121
    Ribosomal_S17e; Ribosomal S17
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O01692.2

Gene LinkOut

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