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Gnrhr gonadotropin releasing hormone receptor [ Mus musculus (house mouse) ]

Gene ID: 14715, updated on 21-Apr-2024

Summary

Official Symbol
Gnrhrprovided by MGI
Official Full Name
gonadotropin releasing hormone receptorprovided by MGI
Primary source
MGI:MGI:95790
See related
Ensembl:ENSMUSG00000029255 AllianceGenome:MGI:95790
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Predicted to enable gonadotropin-releasing hormone receptor activity; growth hormone-releasing hormone receptor activity; and peptide binding activity. Predicted to be involved in G protein-coupled receptor signaling pathway and negative regulation of cell population proliferation. Predicted to act upstream of or within signal transduction. Predicted to be located in plasma membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including adenohypophysis; jaw; mandibular process; and ovary. Used to study hypogonadotropic hypogonadism 7 with or without anosmia. Human ortholog(s) of this gene implicated in hypogonadotropic hypogonadism 7 with or without anosmia. Orthologous to human GNRHR (gonadotropin releasing hormone receptor). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Low expression observed in reference dataset See more
Orthologs
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Genomic context

Location:
5 E1; 5 43.56 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (86328613..86345760, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (86180754..86197901, complement)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E2747 Neighboring gene predicted gene, 24524 Neighboring gene signal transducing adaptor family member 1 Neighboring gene ubiquitin-like modifier activating enzyme 6 Neighboring gene STARR-seq mESC enhancer starr_13544 Neighboring gene STARR-positive B cell enhancer ABC_E10326 Neighboring gene transmembrane protease, serine 11c Neighboring gene STARR-seq mESC enhancer starr_13545 Neighboring gene predicted gene, 25473 Neighboring gene transmembrane protease, serine 11d Neighboring gene STARR-seq mESC enhancer starr_13546 Neighboring gene STARR-seq mESC enhancer starr_13547 Neighboring gene predicted gene, 35367 Neighboring gene STARR-seq mESC enhancer starr_13548

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Gene trapped (1) 
  • Targeted (6)  1 citation
  • Chemically induced (ENU) (1)  1 citation
  • Endonuclease-mediated (4) 

Pathways from PubChem

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables G protein-coupled receptor activity IEA
Inferred from Electronic Annotation
more info
 
enables gonadotropin-releasing hormone receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables growth hormone-releasing hormone receptor activity ISO
Inferred from Sequence Orthology
more info
 
enables peptide binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables protein-hormone receptor activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in G protein-coupled receptor signaling pathway IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in G protein-coupled receptor signaling pathway ISO
Inferred from Sequence Orthology
more info
 
involved_in cellular response to hormone stimulus IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in negative regulation of cell population proliferation ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within signal transduction IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
gonadotropin-releasing hormone receptor
Names
gnRH receptor

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001310651.1NP_001297580.1  gonadotropin-releasing hormone receptor isoform 2

    See identical proteins and their annotated locations for NP_001297580.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an alternate coding exon, which results in a frameshift, compared to variant 1. The encoded isoform (2) has a shorter, distinct C-terminus compared to isoform 1.
    Source sequence(s)
    AC107634
    Consensus CDS
    CCDS80313.1
    UniProtKB/TrEMBL
    A0A192B0U8, D3Z6P7
    Related
    ENSMUSP00000108999.2, ENSMUST00000113372.2
    Conserved Domains (1) summary
    pfam00001
    Location:76174
    7tm_1; 7 transmembrane receptor (rhodopsin family)
  2. NM_001310653.1NP_001297582.1  gonadotropin-releasing hormone receptor isoform 3

    See identical proteins and their annotated locations for NP_001297582.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks the 3' exon and its transcription extends past a splice site used in variant 1, resulting in a distinct 3' coding region and 3' UTR. The encoded isoform (3) has a distinct, shorter C-terminus compared to isoform 1.
    Source sequence(s)
    AC107634
    Consensus CDS
    CCDS84897.1
    UniProtKB/TrEMBL
    Q6P8H4
    Related
    ENSMUSP00000092238.3, ENSMUST00000094654.3
    Conserved Domains (1) summary
    pfam00001
    Location:76247
    7tm_1; 7 transmembrane receptor (rhodopsin family)
  3. NM_010323.2NP_034453.1  gonadotropin-releasing hormone receptor isoform 1

    See identical proteins and their annotated locations for NP_034453.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
    Source sequence(s)
    AC107634, L01119
    Consensus CDS
    CCDS19379.1
    UniProtKB/Swiss-Prot
    Q01776, Q61611
    Related
    ENSMUSP00000031172.9, ENSMUST00000031172.9
    Conserved Domains (1) summary
    pfam00001
    Location:76322
    7tm_1; 7 transmembrane receptor (rhodopsin family)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    86328613..86345760 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017320667.1XP_017176156.1  gonadotropin-releasing hormone receptor isoform X1

    Conserved Domains (2) summary
    cd14964
    Location:3768
    7tm_GPCRs; TM helix 1 [structural motif]
    cl28897
    Location:36174
    7tm_GPCRs; seven-transmembrane G protein-coupled receptor superfamily