U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Opn1mw opsin 1 (cone pigments), medium-wave-sensitive (color blindness, deutan) [ Mus musculus (house mouse) ]

Gene ID: 14539, updated on 30-Apr-2024

Summary

Official Symbol
Opn1mwprovided by MGI
Official Full Name
opsin 1 (cone pigments), medium-wave-sensitive (color blindness, deutan)provided by MGI
Primary source
MGI:MGI:1097692
See related
Ensembl:ENSMUSG00000031394 AllianceGenome:MGI:1097692
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gcp; Rsvp; Opn1lw; ML-opsin
Summary
Predicted to enable G protein-coupled photoreceptor activity and identical protein binding activity. Predicted to be involved in G protein-coupled receptor signaling pathway; cellular response to light stimulus; and phototransduction. Predicted to act upstream of or within protein-chromophore linkage and signal transduction. Located in photoreceptor outer segment. Is expressed in eye; photoreceptor layer; photoreceptor layer outer segment; retina; and retina outer nuclear layer. Used to study blue cone monochromacy. Human ortholog(s) of this gene implicated in blue cone monochromacy and red color blindness. Orthologous to several human genes including OPN1LW (opsin 1, long wave sensitive) and OPN1MW2 (opsin 1, medium wave sensitive 2). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Low expression observed in reference dataset See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Location:
X; X A7.3
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (73171072..73194362)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (74127466..74150756)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene interleukin-1 receptor-associated kinase 1 Neighboring gene microRNA 718 Neighboring gene methyl CpG binding protein 2 Neighboring gene green (M) opsin gene upstream regulatory region Neighboring gene testis expressed 28 Neighboring gene ribosomal protein L3, pseudogene 2

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 
  • Targeted (2)  1 citation

Pathways from PubChem

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables G protein-coupled photoreceptor activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables G protein-coupled receptor activity IEA
Inferred from Electronic Annotation
more info
 
enables identical protein binding ISO
Inferred from Sequence Orthology
more info
 
enables photoreceptor activity ISO
Inferred from Sequence Orthology
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
involved_in G protein-coupled receptor signaling pathway IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in cellular response to light stimulus IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in phototransduction IBA
Inferred from Biological aspect of Ancestor
more info
 
acts_upstream_of_or_within response to stimulus IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within signal transduction IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within visual perception IEA
Inferred from Electronic Annotation
more info
 
involved_in visual perception IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
is_active_in photoreceptor outer segment IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in photoreceptor outer segment IDA
Inferred from Direct Assay
more info
PubMed 
located_in photoreceptor outer segment ISO
Inferred from Sequence Orthology
more info
 
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in plasma membrane ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
medium-wave-sensitive opsin 1
Names
G/R opsin
MWS opsin
R/G opsin
green LWS photopigment
green cone photoreceptor pigment
green long wavelength sensitive cone opsin
green-sensitive opsin
medium wavelength-sensitive cone opsin
midwavelength sensitive opsin
opsin 1 (cone pigments), long-wave-sensitive
red sensitive visual pigment

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_008106.2NP_032132.1  medium-wave-sensitive opsin 1

    See identical proteins and their annotated locations for NP_032132.1

    Status: VALIDATED

    Source sequence(s)
    AF011389, AK149287
    Consensus CDS
    CCDS30220.1
    UniProtKB/Swiss-Prot
    O35599, Q548Z4
    UniProtKB/TrEMBL
    B1AYN7
    Related
    ENSMUSP00000033771.5, ENSMUST00000033771.11
    Conserved Domains (1) summary
    pfam00001
    Location:66317
    7tm_1; 7 transmembrane receptor (rhodopsin family)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    73171072..73194362
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)