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LOC1273662 pre-mRNA-splicing factor 18 [ Anopheles gambiae (African malaria mosquito) ]

Gene ID: 1273662, updated on 4-Jan-2024

Summary

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Gene symbol
LOC1273662
Gene description
pre-mRNA-splicing factor 18
Gene type
protein coding
RefSeq status
MODEL
Organism
Anopheles gambiae
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Culicidae; Anophelinae; Anopheles
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Genomic context

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Location:
chromosome: 2
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_12 current idAnoGambNW_F1_1 (GCF_943734735.2) 2 NC_064601.1 (18791182..18792428)

Chromosome 2 - NC_064601.1Genomic Context describing neighboring genes Neighboring gene pre-mRNA-splicing factor SPF27 Neighboring gene large ribosomal subunit protein uL4 Neighboring gene uncharacterized LOC1273661 Neighboring gene WD repeat-containing protein on Y chromosome Neighboring gene cadherin-99C

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_064601.1 Chromosome 2 Reference idAnoGambNW_F1_1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Anopheles gambiae genome: an update. Mongin E, et al. Trends Parasitol, 2004 Feb. PMID 14747013
  2. The genome sequence of the malaria mosquito Anopheles gambiae. Holt RA, et al. Science, 2002 Oct 4. PMID 12364791

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in RNA splicing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in generation of catalytic spliceosome for second transesterification step IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U2-type post-spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U4/U6 x U5 tri-snRNP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U5 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pre-mRNA-splicing factor 18

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_943734735.2-RS_2023_12

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference idAnoGambNW_F1_1 Primary Assembly

Genomic

  1. NC_064601.1 Reference idAnoGambNW_F1_1 Primary Assembly

    Range
    18791182..18792428
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_312664.4 → XP_312664.3  pre-mRNA-splicing factor 18

    See identical proteins and their annotated locations for XP_312664.3

    UniProtKB/TrEMBL
    Q7QBT9
    Conserved Domains (2) summary
    smart00500
    Location:78 → 121
    SFM; Splicing Factor Motif, present in Prp18 and Pr04
    pfam02840
    Location:195 → 331
    Prp18; Prp18 domain
Nucleotide Protein Strain
Heading Accession and Version

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Molecular Biology Databases
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