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Vmn1r48 vomeronasal 1 receptor 48 [ Mus musculus (house mouse) ]

Gene ID: 113845, updated on 8-Feb-2024

Summary

Official Symbol
Vmn1r48provided by MGI
Official Full Name
vomeronasal 1 receptor 48provided by MGI
Primary source
MGI:MGI:2148508
See related
Ensembl:ENSMUSG00000057592 AllianceGenome:MGI:2148508
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
V1ra3
Summary
Predicted to enable signaling receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to act upstream of or within sensory perception of chemical stimulus. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Orthologous to several human genes including VN1R17P (vomeronasal 1 receptor 17 pseudogene). [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

See Vmn1r48 in Genome Data Viewer
Location:
6 D1; 6 40.02 cM
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (90012915..90013823, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (90035933..90036841, complement)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene vomeronasal 1 receptor, pseudogene 29 Neighboring gene vomeronasal 1 receptor 47 Neighboring gene STARR-positive B cell enhancer mm9_chr6:89977518-89977818 Neighboring gene vomeronasal 1 receptor, pseudogene 31 Neighboring gene vomeronasal 1, receptor 49

Genomic regions, transcripts, and products

Pathways from PubChem

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables G protein-coupled receptor activity IEA
Inferred from Electronic Annotation
more info
 
enables pheromone receptor activity IEA
Inferred from Electronic Annotation
more info
 
enables signaling receptor activity ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
vomeronasal type-1 receptor 48
Names
vomernasal 1 receptor Vmn1r48
vomeronasal 1 receptor, A3
vomeronasal type-1 receptor A3
vomeronasal type-1 receptor A6

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_053218.1NP_444448.1  vomeronasal type-1 receptor 48

    See identical proteins and their annotated locations for NP_444448.1

    Status: PROVISIONAL

    Source sequence(s)
    AF291482
    Consensus CDS
    CCDS20350.1
    UniProtKB/Swiss-Prot
    Q2M2P9, Q8VIC8, Q9EQ51, Q9EQ52
    Related
    ENSMUSP00000073121.2, ENSMUST00000073415.2
    Conserved Domains (1) summary
    pfam03402
    Location:38301
    V1R; Vomeronasal organ pheromone receptor family, V1R

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    90012915..90013823 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)