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POLR3D RNA polymerase III subunit D [ Canis lupus familiaris (dog) ]

Gene ID: 100856457, updated on 8-Mar-2024

Summary

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Official Symbol
POLR3Dprovided by VGNC
Official Full Name
RNA polymerase III subunit Dprovided by VGNC
Primary source
VGNC:VGNC:44803
See related
Ensembl:ENSCAFG00845024956
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 25
Exon count:
9
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 25 NC_051829.1 (35221091..35228107, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 25 NC_006607.4 (35599339..35606355, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 25 NC_049246.1 (35176601..35183620, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 25 NC_049285.1 (35166570..35173586, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 25 NC_049766.1 (35021103..35028122, complement)

Chromosome 25 - NC_051829.1Genomic Context describing neighboring genes Neighboring gene transfer RNA lysine (anticodon UUU) Neighboring gene piwi like RNA-mediated gene silencing 2 Neighboring gene uncharacterized LOC111092313 Neighboring gene microRNA mir-320 Neighboring gene uncharacterized LOC119865949 Neighboring gene phytanoyl-CoA 2-hydroxylase interacting protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transcription by RNA polymerase III IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase III complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA-directed RNA polymerase III subunit RPC4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051829.1 Reference ROS_Cfam_1.0

    Range
    35221091..35228107 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038435478.1 → XP_038291406.1  DNA-directed RNA polymerase III subunit RPC4

    UniProtKB/TrEMBL
    A0A8C0KJV4, A0A8C0NTC2, A0A8C0TKH8, A0A8I3PPE4
    Related
    ENSCAFP00845034536.1, ENSCAFT00845044077.1
    Conserved Domains (1) summary
    pfam05132
    Location:263 → 389
    RNA_pol_Rpc4; RNA polymerase III RPC4

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049285.1 Alternate UMICH_Zoey_3.1

    Range
    35166570..35173586 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038510421.1 → XP_038366349.1  DNA-directed RNA polymerase III subunit RPC4

    Conserved Domains (1) summary
    pfam05132
    Location:263 → 389
    RNA_pol_Rpc4; RNA polymerase III RPC4

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049766.1 Alternate UNSW_CanFamBas_1.0

    Range
    35021103..35028122 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038638187.1 → XP_038494115.1  DNA-directed RNA polymerase III subunit RPC4

    Conserved Domains (1) summary
    pfam05132
    Location:263 → 389
    RNA_pol_Rpc4; RNA polymerase III RPC4

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049246.1 Alternate UU_Cfam_GSD_1.0

    Range
    35176601..35183620 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038573867.1 → XP_038429795.1  DNA-directed RNA polymerase III subunit RPC4

    UniProtKB/TrEMBL
    A0A8C0KJV4, A0A8C0NTC2, A0A8C0TKH8, A0A8I3PPE4
    Conserved Domains (1) summary
    pfam05132
    Location:263 → 389
    RNA_pol_Rpc4; RNA polymerase III RPC4

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006607.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    35599339..35606355 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003639882.4 → XP_003639930.1  DNA-directed RNA polymerase III subunit RPC4

    See identical proteins and their annotated locations for XP_003639930.1

    UniProtKB/TrEMBL
    A0A8C0KJV4, A0A8C0NTC2, A0A8C0TKH8, A0A8I3PPE4
    Conserved Domains (1) summary
    pfam05132
    Location:263 → 389
    RNA_pol_Rpc4; RNA polymerase III RPC4
Nucleotide Protein
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