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TAF5 TATA-box binding protein associated factor 5 [ Canis lupus familiaris (dog) ]

Gene ID: 100688981, updated on 8-Mar-2024

Summary

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Official Symbol
TAF5provided by VGNC
Official Full Name
TATA-box binding protein associated factor 5provided by VGNC
Primary source
VGNC:VGNC:47083
See related
Ensembl:ENSCAFG00845027221
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 28
Exon count:
11
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 28 NC_051832.1 (16223339..16239322)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 28 NC_006610.4 (15919071..15935056)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 28 NC_049249.1 (15938791..15954777)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 28 NC_049288.1 (15772401..15788363)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 28 NC_049769.1 (15800134..15816104)

Chromosome 28 - NC_051832.1Genomic Context describing neighboring genes Neighboring gene internexin neuronal intermediate filament protein alpha Neighboring gene polycomb group ring finger 6 Neighboring gene 40S ribosomal protein S12-like Neighboring gene uncharacterized LOC111093007 Neighboring gene ATP synthase membrane subunit k Neighboring gene microRNA mir-1307 Neighboring gene programmed cell death 11

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II general transcription initiation factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transcription initiation at RNA polymerase II promoter IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of transcription factor TFIID complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription initiation factor TFIID subunit 5
Names
TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 100kDa

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051832.1 Reference ROS_Cfam_1.0

    Range
    16223339..16239322
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038440453.1 → XP_038296381.1  transcription initiation factor TFIID subunit 5

    UniProtKB/TrEMBL
    A0A8C0KBH6, A0A8C0PRN2, A0A8I3S680
    Related
    ENSCAFP00845037630.1, ENSCAFT00845047965.1
    Conserved Domains (3) summary
    cd08044
    Location:212 → 344
    TAF5_NTD2; TAF5_NTD2 is the second conserved N-terminal region of TATA Binding Protein (TBP) Associated Factor 5 (TAF5), involved in forming Transcription Factor IID (TFIID)
    cd00200
    Location:473 → 743
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:474 → 542
    7WD40; WD40 repeat [structural motif]

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049288.1 Alternate UMICH_Zoey_3.1

    Range
    15772401..15788363
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038515074.1 → XP_038371002.1  transcription initiation factor TFIID subunit 5

    Conserved Domains (3) summary
    cd08044
    Location:212 → 344
    TAF5_NTD2; TAF5_NTD2 is the second conserved N-terminal region of TATA Binding Protein (TBP) Associated Factor 5 (TAF5), involved in forming Transcription Factor IID (TFIID)
    cd00200
    Location:473 → 743
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:474 → 542
    7WD40; WD40 repeat [structural motif]

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049769.1 Alternate UNSW_CanFamBas_1.0

    Range
    15800134..15816104
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038642863.1 → XP_038498791.1  transcription initiation factor TFIID subunit 5

    Conserved Domains (3) summary
    cd08044
    Location:212 → 344
    TAF5_NTD2; TAF5_NTD2 is the second conserved N-terminal region of TATA Binding Protein (TBP) Associated Factor 5 (TAF5), involved in forming Transcription Factor IID (TFIID)
    cd00200
    Location:473 → 743
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:474 → 542
    7WD40; WD40 repeat [structural motif]

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049249.1 Alternate UU_Cfam_GSD_1.0

    Range
    15938791..15954777
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038578680.1 → XP_038434608.1  transcription initiation factor TFIID subunit 5

    UniProtKB/TrEMBL
    A0A8C0KBH6, A0A8C0PRN2, A0A8I3S680
    Conserved Domains (3) summary
    cd08044
    Location:212 → 344
    TAF5_NTD2; TAF5_NTD2 is the second conserved N-terminal region of TATA Binding Protein (TBP) Associated Factor 5 (TAF5), involved in forming Transcription Factor IID (TFIID)
    cd00200
    Location:473 → 743
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:474 → 542
    7WD40; WD40 repeat [structural motif]

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006610.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    15919071..15935056
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003433615.5 → XP_003433663.1  transcription initiation factor TFIID subunit 5

    UniProtKB/TrEMBL
    A0A8C0KBH6, A0A8C0PRN2, A0A8I3S680
    Conserved Domains (3) summary
    cd08044
    Location:212 → 344
    TAF5_NTD2; TAF5_NTD2 is the second conserved N-terminal region of TATA Binding Protein (TBP) Associated Factor 5 (TAF5), involved in forming Transcription Factor IID (TFIID)
    cd00200
    Location:473 → 743
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:474 → 542
    7WD40; WD40 repeat [structural motif]
Nucleotide Protein
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