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POLR2J RNA polymerase II subunit J [ Canis lupus familiaris (dog) ]

Gene ID: 100686835, updated on 8-Mar-2024

Summary

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Gene symbol
POLR2J
Gene description
RNA polymerase II subunit J
See related
Ensembl:ENSCAFG00845004740
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 6
Exon count:
4
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 6 NC_051810.1 (7527599..7531054)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 6 NC_006588.4 (9402443..9405898)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 6 NC_049227.1 (7622887..7626343)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 6 NC_049266.1 (7496109..7499564)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 6 NC_049747.1 (7459175..7462631)

Chromosome 6 - NC_051810.1Genomic Context describing neighboring genes Neighboring gene uroplakin 3B like 2 Neighboring gene RAS p21 protein activator 4B Neighboring gene leucine rich repeats and WD repeat domain containing 1 Neighboring gene alkB homolog 4, lysine demethylase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase II, core complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA-directed RNA polymerase II subunit RPB11-a
Names
polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051810.1 Reference ROS_Cfam_1.0

    Range
    7527599..7531054
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038667965.1 → XP_038523893.1  DNA-directed RNA polymerase II subunit RPB11-a isoform X1

    UniProtKB/TrEMBL
    A0A8C0KK70, A0A8C0QLW5, A0A8C0QPJ7, A0A8I3MVK4, A0A8I3RS88
    Related
    ENSCAFP00845006689.1, ENSCAFT00845008485.1
    Conserved Domains (1) summary
    cd06926
    Location:14 → 105
    RNAP_II_RPB11; RPB11 subunit of Eukaryotic RNA polymerase II

  2. XM_038667966.1 → XP_038523894.1  DNA-directed RNA polymerase II subunit RPB11-a isoform X2

    Conserved Domains (1) summary
    cd06926
    Location:17 → 75
    RNAP_II_RPB11; RPB11 subunit of Eukaryotic RNA polymerase II

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049266.1 Alternate UMICH_Zoey_3.1

    Range
    7496109..7499564
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038477932.1 → XP_038333860.1  DNA-directed RNA polymerase II subunit RPB11-a isoform X1

    Conserved Domains (1) summary
    cd06926
    Location:14 → 105
    RNAP_II_RPB11; RPB11 subunit of Eukaryotic RNA polymerase II

  2. XM_038477933.1 → XP_038333861.1  DNA-directed RNA polymerase II subunit RPB11-a isoform X2

    Conserved Domains (1) summary
    cd06926
    Location:17 → 75
    RNAP_II_RPB11; RPB11 subunit of Eukaryotic RNA polymerase II

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049747.1 Alternate UNSW_CanFamBas_1.0

    Range
    7459175..7462631
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038603265.1 → XP_038459193.1  DNA-directed RNA polymerase II subunit RPB11-a isoform X1

    Conserved Domains (1) summary
    cd06926
    Location:14 → 105
    RNAP_II_RPB11; RPB11 subunit of Eukaryotic RNA polymerase II

  2. XM_038603266.1 → XP_038459194.1  DNA-directed RNA polymerase II subunit RPB11-a isoform X2

    Conserved Domains (1) summary
    cd06926
    Location:17 → 75
    RNAP_II_RPB11; RPB11 subunit of Eukaryotic RNA polymerase II

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049227.1 Alternate UU_Cfam_GSD_1.0

    Range
    7622887..7626343
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038539180.1 → XP_038395108.1  DNA-directed RNA polymerase II subunit RPB11-a isoform X1

    UniProtKB/TrEMBL
    A0A8C0KK70, A0A8C0QLW5, A0A8C0QPJ7, A0A8I3MVK4, A0A8I3RS88
    Conserved Domains (1) summary
    cd06926
    Location:14 → 105
    RNAP_II_RPB11; RPB11 subunit of Eukaryotic RNA polymerase II

  2. XM_038539181.1 → XP_038395109.1  DNA-directed RNA polymerase II subunit RPB11-a isoform X2

    Conserved Domains (1) summary
    cd06926
    Location:17 → 75
    RNAP_II_RPB11; RPB11 subunit of Eukaryotic RNA polymerase II

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006588.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    9402443..9405898
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003434734.5 → XP_003434782.3  DNA-directed RNA polymerase II subunit RPB11-a isoform X1

    UniProtKB/TrEMBL
    A0A8C0KK70, A0A8C0QLW5, A0A8C0QPJ7, A0A8I3MVK4, A0A8I3RS88
    Conserved Domains (1) summary
    cd06926
    Location:14 → 105
    RNAP_II_RPB11; RPB11 subunit of Eukaryotic RNA polymerase II

  2. XM_038537699.1 → XP_038393627.1  DNA-directed RNA polymerase II subunit RPB11-a isoform X2

    Conserved Domains (1) summary
    cd06926
    Location:17 → 75
    RNAP_II_RPB11; RPB11 subunit of Eukaryotic RNA polymerase II
Nucleotide Protein
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