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TAF9 TATA-box binding protein associated factor 9 [ Pan troglodytes (chimpanzee) ]

Gene ID: 100612178, updated on 29-Mar-2024

Summary

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Gene symbol
TAF9
Gene description
TATA-box binding protein associated factor 9
Locus tag
CK820_G0034223
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 4
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 4 NC_072402.2 (45284535..45286385)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 5 NC_072403.1 (45699428..45701278)

Chromosome 4 - NC_072402.2Genomic Context describing neighboring genes Neighboring gene MARVEL domain containing 2 Neighboring gene RAD17 checkpoint clamp loader component Neighboring gene adenylate kinase 6 Neighboring gene coiled-coil-helix-coiled-coil-helix domain-containing protein 2-like Neighboring gene coiled-coil domain containing 125

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II general transcription initiation factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription initiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in RNA polymerase II preinitiation complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SAGA complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription factor TFIID complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription factor TFTC complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription initiation factor TFIID subunit 9
Names
TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072402.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    45284535..45286385
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009449058.3 → XP_009447333.1  transcription initiation factor TFIID subunit 9

    See identical proteins and their annotated locations for XP_009447333.1

    UniProtKB/TrEMBL
    A0A2J8L0Y6, A0A2J8L0Z9, A0A8I3B1T3, K7BNM2, K7C4X2
    Conserved Domains (1) summary
    pfam02291
    Location:9 → 129
    TFIID-31kDa; Transcription initiation factor IID, 31kD subunit
Nucleotide Protein
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