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srpk2 SRSF protein kinase 2 [ Danio rerio (zebrafish) ]

Gene ID: 100333293, updated on 11-Apr-2024

Summary

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Official Symbol
srpk2provided by ZNC
Official Full Name
SRSF protein kinase 2provided by ZNC
Primary source
ZFIN:ZDB-GENE-131105-1
See related
AllianceGenome:ZFIN:ZDB-GENE-131105-1
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:zfos-332c3.3
Summary
Orthologous to human SRPK2 (SRSF protein kinase 2). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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See srpk2 in Genome Data Viewer
Location:
chromosome: 25
Exon count:
18
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 25 NC_007136.7 (202039..234688, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 25 NC_007136.6 (192161..212209, complement)

Chromosome 25 - NC_007136.7Genomic Context describing neighboring genes Neighboring gene aquaporin 9a Neighboring gene zgc:114188 Neighboring gene PCNA clamp associated factor Neighboring gene SRSF protein kinase 2-like Neighboring gene pseudouridine synthase 7 Neighboring gene von Willebrand factor A domain containing 5A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Phenotypic Landscape of Schizophrenia-Associated Genes Defines Candidates and Their Shared Functions. Thyme SB, et al. Cell, 2019 Apr 4. PMID 30929901, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables kinase activity IEA
Inferred from Electronic Annotation
more info
  
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
  
enables protein kinase activity IEA
Inferred from Electronic Annotation
more info
  
enables transferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within phosphorylation IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
SRSF protein kinase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007136.7 Reference GRCz11 Primary Assembly

    Range
    202039..234688 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005170649.4 → XP_005170706.2  SRSF protein kinase 2 isoform X2

    UniProtKB/TrEMBL
    A0A8M2BHX8
    Conserved Domains (1) summary
    cl21453
    Location:69 → 259
    PKc_like; Protein Kinases, catalytic domain

  2. XM_021470560.1 → XP_021326235.1  SRSF protein kinase 2 isoform X3

    UniProtKB/TrEMBL
    A0A8M9PYJ9
    Conserved Domains (1) summary
    cl21453
    Location:84 → 274
    PKc_like; Protein Kinases, catalytic domain

  3. XM_021470561.1 → XP_021326236.1  SRSF protein kinase 2 isoform X4

    UniProtKB/TrEMBL
    A0A8M9PV41
    Conserved Domains (1) summary
    cl21453
    Location:513 → 691
    PKc_like; Protein Kinases, catalytic domain

  4. XM_009297680.3 → XP_009295955.2  SRSF protein kinase 2 isoform X1

    UniProtKB/TrEMBL
    A0A8M3B6W8
    Conserved Domains (1) summary
    cl21453
    Location:69 → 259
    PKc_like; Protein Kinases, catalytic domain
Nucleotide Protein Strain
Heading Accession and Version

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