Registry Database of Escherichia coli Sequence and Function

The EcoGene database contains updated information about the E. coli K-12 genome and proteome sequences, including extensive gene bibliographies. A major EcoGene focus has been the re-evaluation of translation start sites.

Prefix
ecogene
Keywords
genome protein
Links
Homepage
Contact
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in Database of Escherichia coli Sequence and Function should match this regular expression:
^EG\d+$

Example Local Unique Identifier
EG10173   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Database of Escherichia coli Sequence and Function should match this regular expression:
^ecogene:EG\d+$

Example CURIE
ecogene:EG10173
Publications
2000 EcoGene: a genome sequence database for Escherichia coli K-12
Metaregistry Database of Escherichia coli Sequence and Function

The metaregistry provides mappings between the Bioregistry and other registries. There are 7 mappings to external registries for this resource with 3 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext EcoGene
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.3q3kvn
Identifiers.org Identifiers.org logo miriam ecogene
N2T Name-to-Thing logo n2t ecogene
NCBI National Center for Biotechnology Information Registry logo ncbi EcoGene
Prefix Commons Prefix Commons logo prefixcommons ecogene
re3data Registry of Research Data Repositories logo re3data r3d100010546
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE ecogene:EG10173 is used to demonstrate the provides available for this resource. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
Database of Escherichia coli Sequence and Function ecogene http://www.ecogene.org/gene/EG10173
Bioregistry bioregistry https://bioregistry.io/ecogene:EG10173
Identifiers.org miriam https://identifiers.org/ecogene:EG10173
Name-to-Thing n2t https://n2t.net/ecogene:EG10173
Extra Providers

Additional providers curated in the Bioregistry are listed here.

Code Name URL
bio2rdf Bio2RDF http://bio2rdf.org/ecogene:EG10173