Registry Molecular Interactions Controlled Vocabulary

The Molecular Interactions (MI) ontology forms a structured controlled vocabulary for the annotation of experiments concerned with protein-protein interactions. MI is developed by the HUPO Proteomics Standards Initiative.

Prefix
mi
Preferred Prefix
MI
Alternative Prefixes
PSI-MI
Keywords
interaction life science molecular interaction molecule obo ontology protein protein interaction
License
CC-BY-4.0
Links
Homepage Repository OBO OWL
Contact
Luana Licata   0000-0001-5084-9000   luanalicata
Pattern for Local Unique Identifiers

Local identifiers in Molecular Interactions Controlled Vocabulary should match this regular expression:
^\d{4}$

Example Local Unique Identifier
0058   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Molecular Interactions Controlled Vocabulary should match this regular expression:
^MI:\d{4}$

Example CURIE
MI:0058
MIRIAM Namespace Embedded in LUI
The legacy MIRIAM standard for generating CURIEs with this resource annotates the namespaceEmbeddedInLUI as true. This means that you may see local unique identifiers that include a redundant prefix and delimiter (also known as a banana) and therefore look like a CURIE. For Molecular Interactions Controlled Vocabulary, the banana looks like MI:. Therefore, you may see local unique identifiers for this resource that look like MI:0058 (instead of the canonical form 0058) and CURIEs for this resource that look like MI:MI:0058 (instead of the canonical form MI:0058). The Bioregistry will automatically strip off the banana when standardizing local unique identifiers and CURIEs.
Publications
2004 The HUPO PSI's molecular interaction format--a community standard for the representation of protein interaction data
Metaregistry Molecular Interactions Controlled Vocabulary

The metaregistry provides mappings between the Bioregistry and other registries. There are 12 mappings to external registries for this resource with 5 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
AberOWL AberOWL logo aberowl MI
BioContext biocontext PSIMI
Biolink Biolink Model Registry logo biolink MI
BioPortal BioPortal Prefixes logo bioportal MI
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.8qzmtr
GO Gene Ontology Registry logo go PSI-MI
Identifiers.org Identifiers.org logo miriam mi
N2T Name-to-Thing logo n2t psimi
OBO Foundry OBO Foundry logo obofoundry mi
OLS Ontology Lookup Service logo ols mi
OntoBee OntoBee logo ontobee MI
Prefix Commons Prefix Commons logo prefixcommons psi.mi
RDF Information

When using this resource in RDF, the following URI format should be used:

http://purl.obolibrary.org/obo/MI_$1

Providers

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 0058 is used to demonstrate the providers available for Molecular Interactions Controlled Vocabulary. A guide for curating additional providers can be found here.

Name Metaprefix URI
Molecular Interactions Controlled Vocabulary mi http://purl.obolibrary.org/obo/MI_0058
Molecular Interactions Controlled Vocabulary (RDF) rdf http://purl.obolibrary.org/obo/MI_0058
Bioregistry bioregistry https://bioregistry.io/mi:0058
Identifiers.org miriam https://identifiers.org/MI:0058
OBO Foundry obofoundry http://purl.obolibrary.org/obo/MI_0058
Ontology Lookup Service ols https://www.ebi.ac.uk/ols4/ontologies/mi/terms?iri=http://purl.obolibrary.org/obo/MI_0058
Name-to-Thing n2t https://n2t.net/psimi:0058
BioPortal Prefixes bioportal https://bioportal.bioontology.org/ontologies/MI/?p=classes&conceptid=http://purl.obolibrary.org/obo/MI_0058
Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.

Code Name URL
bio2rdf Bio2RDF http://bio2rdf.org/psi.mi:0058