Pocketome is an encyclopedia of conformational ensembles of all druggable binding sites that can be identified experimentally from co-crystal structures in the Protein Data Bank. Each Pocketome entry corresponds to a small molecule binding site in a protein which has been co-crystallized in complex with at least one drug-like small molecule, and is represented in at least two PDB entries.

Prefix

pocketome

Keywords

life science

Links

Homepage

Contact

Missing Contact

Pattern for Local Unique Identifiers

Local identifiers in Pocketome should match this regular expression:
^[A-Za-z_0-9]+$

Example Local Unique Identifier

1433C_TOBAC_1_252   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from Pocketome should match this regular expression:
^pocketome:[A-Za-z_0-9]+$

Example CURIE

pocketome:1433C_TOBAC_1_252

Publications

• 2011 Pocketome: an encyclopedia of small-molecule binding sites in 4D
• 2009 The flexible pocketome engine for structural chemogenomics

The metaregistry provides mappings between the Bioregistry and other registries. There are 5 mappings to external registries for this resource with 3 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 1433C_TOBAC_1_252 is used to demonstrate the providers available for Pocketome. A guide for curating additional providers can be found here.