The number of known protein sequences exceeds those of experimentally solved protein structures. Homology (or comparative) modeling methods make use of experimental protein structures to build models for evolutionary related proteins. The Protein Model Portal (PMP) provides a single portal to access these models, which are accessed through their UniProt identifiers.
This resource is a provider. This means that
while it may have its own prefix, it actually reuses the identifiers provided by the
uniprot
prefix. For all use cases, you should use uniprot
instead of pmp
.
pmp
Local identifiers in Protein Model Portal should match this
regular expression:
^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$
Compact URIs (CURIEs) constructed from Protein Model Portal should match
this regular expression:
^pmp:([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$
The metaregistry provides mappings between the Bioregistry and other registries. There are 5 mappings to external registries for this resource with 2 unique external prefixes.
Registry Name | Registry Metaprefix | External Prefix | Curate |
---|---|---|---|
BioContext | biocontext |
PMP
|
|
Identifiers.org | miriam |
pmp
|
|
N2T | n2t |
pmp
|
|
Pathguide | pathguide |
438
|
|
Prefix Commons | prefixcommons |
pmp
|
Providers are various services that resolve CURIEs to URLs. The example CURIE
pmp:Q0VCA6
is used to demonstrate the provides available for
this resource. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
Name | Metaprefix | URI |
---|---|---|
Protein Model Portal | pmp |
http://www.proteinmodelportal.org/query/uniprot/Q0VCA6 |
Bioregistry | bioregistry |
https://bioregistry.io/pmp:Q0VCA6 |
Identifiers.org | miriam |
https://identifiers.org/pmp:Q0VCA6 |
Name-to-Thing | n2t |
https://n2t.net/pmp:Q0VCA6 |
Additional providers curated in the Bioregistry are listed here.
Code | Name | URL |
---|---|---|
bio2rdf |
Bio2RDF | http://bio2rdf.org/pmp:Q0VCA6 |