PaxDb is a resource dedicated to integrating information on absolute protein abundance levels across different organisms. Publicly available experimental data are mapped onto a common namespace and, in the case of tandem mass spectrometry data, re-processed using a standardized spectral counting pipeline. Data sets are scored and ranked to assess consistency against externally provided protein-network information. PaxDb provides whole-organism data as well as tissue-resolved data, for numerous proteins. This collection references individual protein abundance levels.
paxdb.protein
Local identifiers in PaxDb Protein should match this
regular expression:
^\d+$
Compact URIs (CURIEs) constructed from PaxDb Protein should match
this regular expression:
^paxdb\.protein:\d+$
The metaregistry provides mappings between the Bioregistry and other registries. There are 3 mappings to external registries for this resource with 1 unique external prefixes.
Registry Name | Registry Metaprefix | External Prefix | Curate |
---|---|---|---|
BioContext | biocontext |
PAXDB.PROTEIN
|
|
Identifiers.org | miriam |
paxdb.protein
|
|
N2T | n2t |
paxdb.protein
|
Providers are various services that resolve CURIEs to URLs. The example CURIE
paxdb.protein:977869
is used to demonstrate the provides available for
this resource. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
Name | Metaprefix | URI |
---|---|---|
PaxDb Protein | paxdb.protein |
http://pax-db.org/#!protein/977869 |
Bioregistry | bioregistry |
https://bioregistry.io/paxdb.protein:977869 |
Identifiers.org | miriam |
https://identifiers.org/paxdb.protein:977869 |
Name-to-Thing | n2t |
https://n2t.net/paxdb.protein:977869 |