The Human Metabolome Database (HMDB) is a database containing detailed information about small molecule metabolites found in the human body.It contains or links 1) chemical 2) clinical and 3) molecular biology/biochemistry data.
hmdb
Local identifiers in Human Metabolome Database should match this
regular expression:
^HMDB\d+$
Compact URIs (CURIEs) constructed from Human Metabolome Database should match
this regular expression:
^hmdb:HMDB\d+$
A summary of the relations in the Bioregistry schema can be found here.
The metaregistry provides mappings between the Bioregistry and other registries. There are 12 mappings to external registries for this resource with 8 unique external prefixes.
Registry Name | Registry Metaprefix | External Prefix | Curate |
---|---|---|---|
BioContext | biocontext |
HMDB
|
|
CHEMINF | cheminf |
000408
|
|
EDAM | edam |
2622
|
|
FAIRSharing | fairsharing |
FAIRsharing.sye5js
|
|
Integbio | integbio |
nbdc00909
|
|
Identifiers.org | miriam |
hmdb
|
|
N2T | n2t |
hmdb
|
|
Pathguide | pathguide |
244
|
|
Prefix Commons | prefixcommons |
hmdb
|
|
re3data | re3data |
r3d100011285
|
|
TogoID | togoid |
Hmdb
|
|
Wikidata | wikidata |
P2057
|
Providers are various services that resolve CURIEs to URLs. The example CURIE
hmdb:HMDB00001
is used to demonstrate the provides available for
this resource. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
Name | Metaprefix | URI |
---|---|---|
Human Metabolome Database | hmdb |
http://www.hmdb.ca/metabolites/HMDB00001 |
Bioregistry | bioregistry |
https://bioregistry.io/hmdb:HMDB00001 |
Identifiers.org | miriam |
https://identifiers.org/hmdb:HMDB00001 |
Name-to-Thing | n2t |
https://n2t.net/hmdb:HMDB00001 |
Additional providers curated in the Bioregistry are listed here.
Code | Name | URL |
---|---|---|
bio2rdf |
Bio2RDF | http://bio2rdf.org/hmdb:HMDB00001 |