The dbSNP database is a repository for both single base nucleotide subsitutions and short deletion and insertion polymorphisms.
dbsnp
Local identifiers in dbSNP Reference SNP number should match this
regular expression:
^rs\d+$
Compact URIs (CURIEs) constructed from dbSNP Reference SNP number should match
this regular expression:
^dbsnp:rs\d+$
A summary of the relations in the Bioregistry schema can be found here.
The metaregistry provides mappings between the Bioregistry and other registries. There are 15 mappings to external registries for this resource with 8 unique external prefixes.
Registry Name | Registry Metaprefix | External Prefix | Curate |
---|---|---|---|
BioContext | biocontext |
dbSNP
|
|
Cellosaurus | cellosaurus |
dbSNP
|
|
EDAM | edam |
1106
|
|
FAIRSharing | fairsharing |
FAIRsharing.edxb58
|
|
GO | go |
dbSNP
|
|
HL7 | hl7 |
2.16.840.1.113883.6.284
|
|
Integbio | integbio |
nbdc00206
|
|
Identifiers.org | miriam |
dbsnp
|
|
N2T | n2t |
dbsnp
|
|
NCBI | ncbi |
dbSNP
|
|
Prefix Commons | prefixcommons |
dbsnp
|
|
re3data | re3data |
r3d100010652
|
|
TogoID | togoid |
Dbsnp
|
|
UniProt | uniprot |
DB-0013
|
|
Wikidata | wikidata |
P6861
|
Providers are various services that resolve CURIEs to URLs. The example CURIE
dbsnp:rs121909098
is used to demonstrate the provides available for
this resource. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
Name | Metaprefix | URI |
---|---|---|
dbSNP Reference SNP number | dbsnp |
https://www.ncbi.nlm.nih.gov/snp/rs121909098 |
Bioregistry | bioregistry |
https://bioregistry.io/dbsnp:rs121909098 |
Identifiers.org | miriam |
https://identifiers.org/dbsnp:rs121909098 |
Name-to-Thing | n2t |
https://n2t.net/dbsnp:rs121909098 |
Additional providers curated in the Bioregistry are listed here.
Code | Name | URL |
---|---|---|
bio2rdf |
Bio2RDF | http://bio2rdf.org/dbsnp:rs121909098 |
sib |
SNP2TFBS | https://ccg.epfl.ch/cgi-bin/snp2tfbs/snpviewer_form_parser.cgi?snpid=rs121909098 |