The Protein database is a collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB.
ncbiprotein
NCBIProtein
Local identifiers in NCBI Protein should match this
regular expression:
^(\w+\d+(\.\d+)?)|(NP_\d+)$
Compact URIs (CURIEs) constructed from NCBI Protein should match
this regular expression:
^NCBIProtein:(\w+\d+(\.\d+)?)|(NP_\d+)$
A summary of the relations in the Bioregistry schema can be found here.
The following resources share a URI format string with ncbiprotein
:
insdc.cds
refseq
When generating an extended prefix map, their respective CURIE prefixes and URI
prefixes are merged into the record for ncbiprotein
.
If you believe that these are distinct semantic spaces and should not be merged,
please open a new issue on the Bioregistry issue tracker
for discussion.
The metaregistry provides mappings between the Bioregistry and other registries. There are 7 mappings to external registries for this resource with 5 unique external prefixes.
Registry Name | Registry Metaprefix | External Prefix | Curate |
---|---|---|---|
BioContext | biocontext |
NCBIProtein
|
|
GO | go |
NCBI_NP
|
|
Integbio | integbio |
nbdc00636
|
|
Identifiers.org | miriam |
ncbiprotein
|
|
N2T | n2t |
ncbiprotein
|
|
Prefix Commons | prefixcommons |
ncbi.protein
|
|
re3data | re3data |
r3d100010776
|
Providers are various services that resolve CURIEs to URLs. The example CURIE
NCBIProtein:CAA71118.1
is used to demonstrate the provides available for
this resource. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
Name | Metaprefix | URI |
---|---|---|
NCBI Protein | ncbiprotein |
https://www.ncbi.nlm.nih.gov/protein/CAA71118.1 |
Bioregistry | bioregistry |
https://bioregistry.io/ncbiprotein:CAA71118.1 |
Identifiers.org | miriam |
https://identifiers.org/ncbiprotein:CAA71118.1 |
Name-to-Thing | n2t |
https://n2t.net/ncbiprotein:CAA71118.1 |
Additional providers curated in the Bioregistry are listed here.
Code | Name | URL |
---|---|---|
bio2rdf |
Bio2RDF | http://bio2rdf.org/ncbi.protein:CAA71118.1 |