HAMAP is a system that identifies and semi-automatically annotates proteins that are part of well-conserved and orthologous microbial families or subfamilies. These are used to build rules which are used to propagate annotations to member bacterial, archaeal and plastid-encoded protein entries.

Prefix

hamap

Keywords

life science protein

Links

Homepage

Contact

Alan Bridge   0000-0003-2148-9135

Pattern for Local Unique Identifiers

Local identifiers in High-quality Automated and Manual Annotation of microbial Proteomes should match this regular expression:
^MF_\d+$

Example Local Unique Identifier

MF_01400   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from High-quality Automated and Manual Annotation of microbial Proteomes should match this regular expression:
^hamap:MF_\d+$

Example CURIE

hamap:MF_01400

Publications

• 2014 HAMAP in 2015: updates to the protein family classification and annotation system
• 2012 HAMAP in 2013, new developments in the protein family classification and annotation system

The metaregistry provides mappings between the Bioregistry and other registries. There are 8 mappings to external registries for this resource with 4 unique external prefixes.

Providers are various services that resolve CURIEs to URLs. The example CURIE hamap:MF_01400 is used to demonstrate the provides available for this resource. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Additional providers curated in the Bioregistry are listed here.