HAMAP is a system that identifies and semi-automatically annotates proteins that are part of well-conserved and orthologous microbial families or subfamilies. These are used to build rules which are used to propagate annotations to member bacterial, archaeal and plastid-encoded protein entries.
hamap
Local identifiers in High-quality Automated and Manual Annotation of microbial Proteomes should match this
regular expression:
^MF_\d+$
Compact URIs (CURIEs) constructed from High-quality Automated and Manual Annotation of microbial Proteomes should match
this regular expression:
^hamap:MF_\d+$
The metaregistry provides mappings between the Bioregistry and other registries. There are 8 mappings to external registries for this resource with 4 unique external prefixes.
Registry Name | Registry Metaprefix | External Prefix | Curate |
---|---|---|---|
BioContext | biocontext |
HAMAP
|
|
EDAM | edam |
2766
|
|
FAIRSharing | fairsharing |
FAIRsharing.63m4ss
|
|
GO | go |
HAMAP
|
|
Identifiers.org | miriam |
hamap
|
|
N2T | n2t |
hamap
|
|
Prefix Commons | prefixcommons |
hamap
|
|
UniProt | uniprot |
DB-0041
|
Providers are various services that resolve CURIEs to URLs. The example CURIE
hamap:MF_01400
is used to demonstrate the provides available for
this resource. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
Additional providers curated in the Bioregistry are listed here.
Code | Name | URL |
---|---|---|
bio2rdf |
Bio2RDF | http://bio2rdf.org/hamap:MF_01400 |