QTL Accession ID | CQG5 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | ABXSTOFQ |
Trait Name | abaxial stomatal frequency |
Published Symbol | |
Trait Synonym(s) | |
Trait Category | Anatomy |
Chromosome | 7 |
Comments | Number of stomata present on the abaxial surface of the leaf. The number of stomata was counted at 400X magnification repeated in five impressions (made with finger nail polish) of a leaf from each of five plants. The flag leaves at 70 days after transplanting were used for analyses. Phenotypic effect contributed by Nipponbare allele. The means of ten replications per line were used in the data analysis. Chromosomal locations of putative QTLs were determined by single-factor analysis (one-way ANOVA) with the general linear model procedure of QGENE. A probability level of 0.01 was used as the threshold for detecting significant differences in the mean values of the two genotypic classes, homozygous for Nipponbare and Kasalath alleles. Two-way ANOVA for epistatic interaction were also done with QGENE at this threshold. The trait correlated to adaxial stomatal frequency (r=0.66; P<0.01). |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 7 | 16,872,010-20,346,668 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | JRGP Nip/Kas F2 QTL 2000 | BNL6.32 | 7 | 56.2-71.6 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
CQG5 | 7 | 56.2 | 71.6 |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000529) | Ishimaru-K et al., 2001 (IAGP) |
Plant Structure | (PO:0002000) | Ishimaru-K et al., 2001 (SM) |
Plant Growth and Development Stage | (PO:0007134) | Ishimaru-K et al., 2001 (SM) |
(PO:0007130) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Ishimaru-K et al., 2001 (SM) |
(GRO:0007140) | Gramene curators, 2007 (IC) | |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Ishimaru-K et al., 2001 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr7 | 16,872,010 | 20,346,668 | ~160K SNPs x 20 accessions (McNally 2... | 512 | Search for SNPs |
chr7 | 16,872,010 | 20,346,668 | '1536 chip' - 1311 SNPs x 395 rice ac... | 10 | Search for SNPs |
chr7 | 16,872,010 | 20,346,668 | Huang X, et al, Nat Genetics 2010 Nov... | 9,858 | Search for SNPs |
chr7 | 16,872,010 | 20,346,668 | RiceDiversity 44K SNP assay, 34 trait... | 9,858 | Search for SNPs |
chr7 | 16,872,010 | 20,346,668 | RiceDiversity 44K SNP assay, 34 trait... | 244 | Search for SNPs |