Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: NOTCH1 ENSPTRG00000021561

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Description

notch receptor 1 [Source:VGNC Symbol;Acc:VGNC:4807]

Location

Chromosome 9: 114,870,367-114,922,724 reverse strand.

Pan_tro_3.0:CM000323.3

About this gene

This gene has 3 transcripts (splice variants), 273 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000039960.6	NOTCH1-201	9537	2555aa	ENSPTRP00000036924.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2XGF7 H2QY65	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000088628.1	NOTCH1-202	7581	2526aa	ENSPTRP00000082696.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3T0D0	-
ENSPTRT00000085228.1	NOTCH1-203	7572	2523aa	ENSPTRP00000071305.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3S400	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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