Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: CACNA2D1 ENSPTRG00000019350

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Description

calcium voltage-gated channel auxiliary subunit alpha2delta 1 [Source:VGNC Symbol;Acc:VGNC:8674]

Location

Chromosome 7: 84,744,022-85,235,137 reverse strand.

Pan_tro_3.0:CM000321.4

About this gene

This gene has 5 transcripts (splice variants), 285 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000107118.1	CACNA2D1-203	3312	1103aa	ENSPTRP00000071747.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3S420 A0A6D2W5R1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000047191.6	CACNA2D1-204	3276	1091aa	ENSPTRP00000043656.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2Y429 H2R2A6	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSPTRT00000109383.1	CACNA2D1-202	3099	1032aa	ENSPTRP00000066101.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RN23	-
ENSPTRT00000093035.1	CACNA2D1-201	2802	933aa	ENSPTRP00000089803.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TLL4	-
ENSPTRT00000109184.1	CACNA2D1-205	930	309aa	ENSPTRP00000078830.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SPD5 A0A6D2Y7G9	-

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Summary

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